Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Vspart_RS05065 Genome accession   NZ_CP046268
Coordinates   1108323..1109723 (+) Length   466 a.a.
NCBI ID   WP_074374477.1    Uniprot ID   -
Organism   Vibrio spartinae strain 3.6     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103323..1114723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vspart_RS22105 - 1104990..1105139 (-) 150 WP_410177038.1 tyrosine-type recombinase/integrase -
  Vspart_RS05060 (Vspart_01039) uvrB 1106018..1108048 (+) 2031 WP_074374476.1 excinuclease ABC subunit UvrB -
  Vspart_RS05065 (Vspart_01041) luxO 1108323..1109723 (+) 1401 WP_074374477.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Vspart_RS05070 (Vspart_01042) luxU 1109726..1110076 (+) 351 WP_074374478.1 quorum-sensing phosphorelay protein LuxU -
  Vspart_RS05075 (Vspart_01043) yvcK 1110131..1111051 (-) 921 WP_182288327.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  Vspart_RS05080 (Vspart_01045) moaA 1111357..1112340 (+) 984 WP_074374480.1 GTP 3',8-cyclase MoaA -
  Vspart_RS05085 (Vspart_01046) moaB 1112511..1113017 (+) 507 WP_182288328.1 molybdenum cofactor biosynthesis protein B -
  Vspart_RS05090 (Vspart_01047) moaC 1113036..1113515 (+) 480 WP_074374482.1 cyclic pyranopterin monophosphate synthase MoaC -
  Vspart_RS05095 (Vspart_01048) moaD 1113512..1113757 (+) 246 WP_074374483.1 molybdopterin synthase sulfur carrier subunit -
  Vspart_RS05100 (Vspart_01049) moaE 1113759..1114211 (+) 453 WP_182288329.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52524.16 Da        Isoelectric Point: 5.1128

>NTDB_id=402156 Vspart_RS05065 WP_074374477.1 1108323..1109723(+) (luxO) [Vibrio spartinae strain 3.6]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEERKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNSEEKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=402156 Vspart_RS05065 WP_074374477.1 1108323..1109723(+) (luxO) [Vibrio spartinae strain 3.6]
ATGCAATCTGAACAATTACCACAAAAAAGTAGATATCTGCTGATGGTTGAAGATACAGCGTCTGTTGCCGTGCTGTATCG
AACCTATCTTGAGCCTCTGGATATTGACATCAATATTGTCGGTACGGGGAAAGAGGCGTTAGAGAGTCTTGAAAAAAGAG
AACCTGATCTGATTCTGCTCGATTTACGGCTTCCGGATATGACAGGCATGGATGTGTTACATGAGGTGAAACGGAAATAC
CCGGATGTTCCCGTCATTTTCATGACCGCTCATGGCTCAATTGATACGGCCGTCGAAGCCATGCGCTATGGTGCTCAGGA
TTTTCTAATTAAACCATGCGAAGCAGACCGATTACGAGTTACTGTAAATAATGCGATTCGTAAAGCTTCAAAAATTAAGA
GTGATTCCGATGACCCGCGTAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACCATGCAGGCCGTTTATCGAACC
ATTGACTCTGCGGCAGCGAGTAAAGCCAGTATTTTTATCACCGGAGAAAGCGGTACCGGGAAAGAAGTGTGTGCTGAAGC
TATTCATGCTGCAAGTCGGCGAGGTGATAAACCTTTCATTGCGATTAACTGTGCAGCCATTCCGAAAGATTTAATTGAAA
GTGAACTATTCGGTCATGTTAAAGGTGCTTTTACGGGAGCTGCAACTGATCGACAAGGTGCTGCGGAGCTCGCTGATGGC
GGGACGCTATTTCTGGATGAGCTCTGTGAGATGGATTTAGACTTACAGACTAAATTGTTGCGGTTTATCCAAACCGGTAC
GTTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTCTGTGCGACAAACCGTGACCCGTGGAAAG
AGGTTCAGGAAGGTCGTTTCCGGGAAGATTTGTACTATCGTTTATATGTGATCCCACTTCACCTGCCACCGCTTCGGGAG
CGTGGTGATGATGTCATCGAAATTGCTTATTCTTTGCTCGGTTATATGTCCAAAGAAGAAGAGAAAGATTTTGTTCGCCT
TGCCGCTGAAGTCGTGGAACGTTTTAGACAGTACGAATGGCCGGGCAATGTCCGTCAATTGCAGAATGTTTTACGTAATG
TGGTTGTGCTGAATCAGGGTAAAGAAATCACGCTGAGTATGTTACCACCCCCATTGAATCAACCGAAAGAAAGTTATCTC
CGTTTGGTTCAACCGATGATGGAAGAAAGGAAACCTTCAGTCCATGAAATATTTCCATTATGGATGACAGAAAAAATGGC
AATCGAAAATGCCATTGACGCCTGTGAAGGAAATATTCCGAAAGCCGCAGGCTATCTGGAAGTGAGCCCTTCAACCATTT
ACCGCAAGTTACAGTCTTGGAATTCAGAAGAGAAAGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.472

95.923

0.839
  pilR Acinetobacter baumannii strain A118

35.897

100

0.361

Multiple sequence alignment