NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	HUT18_RS26790	Genome accession	NZ_CP054918
Coordinates	6283966..6285582 (+)	Length	538 a.a.
NCBI ID	WP_176103095.1	Uniprot ID	-
Organism	Streptomyces sp. NA04227
Function	promote branch migration (predicted from homology) Homologous recombination

Genomic Context

Location: 6278966..6290582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUT18_RS26760 (HUT18_26755)	lepB	6278990..6280102 (+)	1113	WP_254878822.1	signal peptidase I	-
HUT18_RS26765 (HUT18_26760)	lepB	6279984..6281024 (+)	1041	WP_176103092.1	signal peptidase I	-
HUT18_RS26770 (HUT18_26765)	lepB	6281096..6281842 (+)	747	WP_176103093.1	signal peptidase I	-
HUT18_RS26775 (HUT18_26770)	-	6281937..6282413 (+)	477	WP_176104823.1	NUDIX hydrolase	-
HUT18_RS26780 (HUT18_26775)	-	6282469..6282777 (+)	309	WP_005311352.1	DUF2469 domain-containing protein	-
HUT18_RS33980	-	6283577..6283966 (+)	390	WP_254879099.1	YraN family protein	-
HUT18_RS26790 (HUT18_26785)	comM	6283966..6285582 (+)	1617	WP_176103095.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
HUT18_RS26795 (HUT18_26790)	dprA	6285579..6286760 (+)	1182	WP_176103096.1	DNA-processing protein DprA	-
HUT18_RS26800 (HUT18_26795)	whiG	6287391..6288227 (+)	837	WP_176103097.1	RNA polymerase sigma factor WhiG	-
HUT18_RS26805 (HUT18_26800)	-	6288553..6289110 (+)	558	WP_176104824.1	TetR/AcrR family transcriptional regulator	-
HUT18_RS33985	-	6289433..6289888 (-)	456	WP_254878823.1	M23 family metallopeptidase	-

Sequence

Protein

Download Length: 538 a.a. Molecular weight: 55342.72 Da Isoelectric Point: 7.5281

                                >NTDB_id=402115 HUT18_RS26790 WP_176103095.1 6283966..6285582(+) (comM) [Streptomyces sp. NA04227]

MGFARACSVALVGVEGVVIEVQADLEPGVAAFTLVGLPDKSLSESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG

FDLAVACAVLAAAERLDPKALTDIVMIGELGLDGHVRPVRGILPSVLAAAEAGCRQVVVPESAAAEAALVPGVSGLGVRS

LRQLIAVLNDEPVPDEDPAPYSLSTTGPLGAPGLATLGTGLGGPGNRAAKDLADVVGQHTARLAMEVAAAGGHHVLWTGP

PGAGKTMLAERMPAIMPPLTRVESLEVTAVHSIAGILPPGKPLVDTPPYCAPHHSATMQSLVGGGHGVARPGAVSLAHRG

LLFLDEAPEFSGHALDSLRQPLESGHVVIARSAGVVRLPAKFLMMLAANPCPCGRRGSGPGAGCECPTAAVRRYQARLSG

PLLDRVDLRVEVRPVTRAELAGTGIPGESTATVAARVLAARERAAARLAHTPWRTNSDVPGHEMRTQWPPAPGAMHKAEA

GLETGRLTARGLDRVLRVAWTVADLTGHDRPDEQDVALALQLRTGIPQGVPLTLGARP

Nucleotide

Download Length: 1617 bp

                                >NTDB_id=402115 HUT18_RS26790 WP_176103095.1 6283966..6285582(+) (comM) [Streptomyces sp. NA04227]

ATGGGATTCGCCCGTGCTTGTTCCGTTGCCCTAGTCGGCGTCGAAGGGGTCGTCATCGAGGTCCAGGCCGACCTCGAACC

GGGCGTTGCCGCCTTCACCCTCGTCGGACTGCCCGACAAGAGCCTCAGCGAAAGCCGCGACCGCGTACGCGCCGCAGTCG

TCAACTCCGGTGCCGAATGGCCCCAGAAGAAGCTCACCGTCGGCCTCAGCCCCGCCTCCGTCCCCAAGAGCGGCAGCGGC

TTCGACCTTGCCGTCGCCTGCGCGGTGCTCGCCGCCGCGGAACGCCTTGACCCCAAGGCCCTCACCGACATCGTCATGAT

CGGCGAACTCGGACTCGACGGGCACGTCCGGCCCGTACGGGGCATCCTGCCCTCCGTACTGGCCGCCGCAGAGGCAGGCT

GCCGACAGGTCGTCGTCCCCGAGAGCGCCGCCGCCGAAGCCGCCCTCGTCCCGGGCGTCTCCGGCCTCGGCGTCCGCAGT

CTGCGCCAGCTCATCGCCGTACTCAACGACGAACCCGTACCCGACGAAGACCCCGCCCCCTACTCCCTCTCCACGACCGG

CCCCCTCGGCGCACCCGGCCTCGCCACCCTCGGCACCGGGCTCGGCGGACCCGGCAACCGCGCCGCCAAAGACCTCGCCG

ACGTGGTCGGACAGCACACGGCACGCCTCGCCATGGAAGTCGCCGCGGCAGGCGGCCACCACGTCCTGTGGACAGGACCG

CCCGGTGCCGGCAAGACCATGCTCGCCGAACGCATGCCCGCGATCATGCCGCCCCTGACCCGCGTGGAATCCCTCGAAGT

CACCGCCGTGCACTCCATCGCCGGGATCCTGCCGCCCGGCAAACCCCTCGTCGACACCCCGCCGTACTGCGCCCCGCACC

ACTCGGCGACCATGCAGTCCCTCGTCGGCGGCGGACACGGCGTGGCCAGACCCGGAGCCGTCTCCCTCGCCCACCGAGGC

CTCCTCTTCCTGGACGAAGCCCCCGAGTTCAGCGGACACGCCCTCGACTCCCTGCGCCAGCCCCTCGAATCCGGCCACGT

CGTCATCGCCCGCAGCGCCGGAGTGGTACGGCTGCCCGCCAAGTTCCTCATGATGCTCGCCGCCAACCCCTGCCCCTGCG

GACGCAGAGGCAGCGGCCCCGGCGCCGGGTGCGAATGCCCCACCGCGGCCGTACGCCGCTACCAGGCGCGCCTGTCCGGA

CCGCTCCTCGACCGAGTGGACCTGCGCGTAGAAGTCCGGCCGGTCACCCGGGCCGAACTCGCGGGCACGGGCATTCCCGG

CGAATCCACCGCGACCGTGGCGGCCAGGGTCCTCGCCGCCCGCGAACGCGCGGCGGCCCGCCTCGCCCACACCCCGTGGC

GCACCAACAGCGACGTGCCGGGACACGAAATGCGCACCCAGTGGCCACCTGCCCCGGGAGCCATGCACAAGGCGGAGGCC

GGTCTCGAAACCGGACGGCTCACCGCCCGAGGACTCGACCGAGTCCTGCGCGTCGCCTGGACCGTCGCCGACCTCACCGG

ACACGACCGCCCCGACGAACAGGACGTCGCCCTCGCCCTGCAACTGCGCACCGGCATCCCCCAAGGCGTCCCCCTGACCC

TCGGGGCCCGGCCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(211-419)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(427-523)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Acinetobacter baylyi ADP1	39.623	98.513	0.39
comM	Vibrio campbellii strain DS40M4	39.006	97.212	0.379
comM	Vibrio cholerae O1 biovar El Tor strain E7946	39.335	94.981	0.374
comM	Vibrio cholerae strain A1552	39.335	94.981	0.374

Detailed information NTG0402115