Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GMB29_RS19075 Genome accession   NZ_CP046266
Coordinates   3974441..3976141 (-) Length   566 a.a.
NCBI ID   WP_136352993.1    Uniprot ID   A0A4S4BZ28
Organism   Metabacillus sediminilitoris strain DSL-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3969441..3981141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMB29_RS19055 (GMB29_19055) - 3970611..3970829 (+) 219 WP_196305197.1 helix-turn-helix domain-containing protein -
  GMB29_RS19060 (GMB29_19060) - 3971001..3971171 (+) 171 WP_155443922.1 hypothetical protein -
  GMB29_RS19065 (GMB29_19065) spo0A 3971507..3972298 (-) 792 WP_136352989.1 sporulation transcription factor Spo0A -
  GMB29_RS19070 (GMB29_19070) spoIVB 3972601..3973833 (-) 1233 WP_235883141.1 SpoIVB peptidase -
  GMB29_RS19075 (GMB29_19075) recN 3974441..3976141 (-) 1701 WP_136352993.1 DNA repair protein RecN Machinery gene
  GMB29_RS19080 (GMB29_19080) ahrC 3976256..3976705 (-) 450 WP_136352995.1 transcriptional regulator AhrC/ArgR -
  GMB29_RS19085 (GMB29_19085) - 3976969..3977820 (-) 852 WP_136352997.1 TlyA family RNA methyltransferase -
  GMB29_RS19090 (GMB29_19090) dxs 3977817..3979718 (-) 1902 WP_136352999.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GMB29_RS19095 (GMB29_19095) - 3980068..3980952 (-) 885 WP_227551391.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 63832.43 Da        Isoelectric Point: 4.9322

>NTDB_id=402092 GMB29_RS19075 WP_136352993.1 3974441..3976141(-) (recN) [Metabacillus sediminilitoris strain DSL-17]
MLAELSIKNFAIIEALTISFEKGLTVLTGETGAGKSIIIDAIHLLAGARGSSEFVRYGEKRAELEGLFLLDDDHHPVYSK
CEEFGIDVSDGMIVLRRDLSSSGKSICRINGKLVTLAILREIGQYLVDIHGQHDNQELMNADNHLSLLDQYGGQKVKQAL
EIYRDIFKNYDMLRKKITQLSDNEQEMAHRLDLLQFQLDEIESAELKPNEDVLLLEEKNQIANFEKVYDSLHNSYNALHG
EHKGLDWVGHAMSNLEDVASINETLKGLSETISNAYYLLEDLSYQVRNELESLEFDPERLNFVESRLNEINHLKRKYGQT
VEEILVYSAKIEEEIDTIQNRESHLDKLQKELQSILQDLSIEAKNVTSIRNNYAKILIEEIHRELKELYMEKTTFDVNFS
SKMTAENELKYTASGIDEVEFYLSTNPGEPLKPLNKTASGGELSRIMLAMKSIFSQHQGITSIIFDEVDTGVSGRVAQAI
AEKIYRVSIGSQVLCITHLPQVAAMADTHLYIAKQTKSGRTKTSVKPLADEEKIKEIGRMIAGVEVTELSKEHAKELLSL
AHTSKG

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=402092 GMB29_RS19075 WP_136352993.1 3974441..3976141(-) (recN) [Metabacillus sediminilitoris strain DSL-17]
TTGTTAGCGGAATTATCGATTAAAAACTTTGCCATAATAGAAGCATTAACAATTTCCTTTGAAAAAGGACTTACAGTTTT
AACTGGAGAAACTGGCGCAGGTAAATCCATTATCATTGATGCGATTCATTTGTTAGCTGGAGCTAGAGGATCTTCTGAAT
TCGTTCGCTATGGTGAAAAACGAGCTGAGCTTGAAGGTCTTTTTCTTTTAGACGATGACCATCATCCTGTTTACTCAAAA
TGTGAAGAGTTTGGGATTGATGTAAGTGACGGGATGATCGTGTTACGGAGAGATTTATCCTCTTCTGGTAAAAGTATTTG
TCGGATTAATGGAAAGCTTGTTACACTGGCTATTTTAAGAGAAATCGGGCAATATTTAGTTGACATACATGGTCAGCATG
ATAACCAAGAATTGATGAATGCAGATAATCATCTTAGCCTTCTTGATCAGTATGGCGGACAGAAAGTCAAGCAAGCACTT
GAAATTTATCGTGATATTTTTAAAAATTATGATATGCTGCGAAAAAAAATTACTCAGCTTTCGGATAACGAGCAAGAAAT
GGCTCATCGTCTCGATTTGCTTCAATTTCAACTAGATGAAATCGAGAGTGCGGAATTAAAGCCAAATGAGGATGTTCTCC
TTCTAGAGGAAAAAAATCAAATTGCTAATTTTGAAAAAGTATATGATTCATTGCATAATTCCTATAATGCGCTACATGGA
GAACATAAAGGATTAGATTGGGTCGGACATGCAATGAGTAATTTAGAAGATGTTGCCTCTATCAATGAAACATTAAAAGG
ACTATCTGAAACCATTTCAAATGCATATTATTTATTAGAAGATCTTTCCTATCAAGTTAGAAATGAATTAGAATCGCTTG
AATTTGATCCAGAGCGCTTGAATTTTGTTGAAAGCCGGTTAAATGAAATTAATCATTTAAAACGAAAATATGGACAAACT
GTTGAAGAAATTCTTGTTTATTCAGCGAAAATAGAAGAAGAAATTGATACAATTCAAAATCGGGAAAGTCATTTAGATAA
ATTGCAAAAAGAGTTGCAATCTATCCTGCAAGATCTGTCAATAGAAGCAAAAAATGTCACAAGTATTCGTAATAACTATG
CGAAAATACTGATAGAAGAAATTCATCGGGAATTAAAAGAATTATATATGGAGAAAACGACGTTTGATGTAAATTTTTCT
TCTAAAATGACTGCAGAGAACGAGTTGAAATATACAGCAAGTGGGATTGATGAAGTTGAATTTTATCTATCAACAAATCC
TGGAGAGCCATTAAAACCTCTAAATAAAACAGCTTCAGGTGGGGAGCTTTCTCGTATTATGCTTGCGATGAAAAGTATAT
TCTCTCAACATCAAGGGATAACTTCAATTATATTTGATGAAGTTGATACAGGTGTAAGCGGCCGAGTTGCACAAGCAATC
GCCGAAAAAATTTACCGGGTTTCAATCGGTTCACAAGTCTTATGTATCACTCATCTACCACAGGTGGCAGCAATGGCTGA
TACACATTTATATATTGCAAAGCAAACAAAGTCAGGTCGAACAAAAACGAGTGTAAAACCACTTGCTGACGAAGAGAAAA
TAAAAGAAATCGGCCGTATGATTGCAGGTGTCGAGGTAACAGAGCTCTCTAAGGAACATGCAAAAGAGTTGCTTTCTCTT
GCACATACTTCCAAAGGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4BZ28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

67.77

100

0.687

Multiple sequence alignment