Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   GMB29_RS04850 Genome accession   NZ_CP046266
Coordinates   952770..952952 (+) Length   60 a.a.
NCBI ID   WP_136355211.1    Uniprot ID   A0A4S4BV43
Organism   Metabacillus sediminilitoris strain DSL-17     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 947770..957952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMB29_RS04825 (GMB29_04825) - 949062..949241 (+) 180 WP_136355218.1 YjzC family protein -
  GMB29_RS04830 (GMB29_04830) - 949364..949555 (-) 192 WP_136355216.1 YjzD family protein -
  GMB29_RS04835 (GMB29_04835) - 950093..950827 (+) 735 WP_136355281.1 alpha/beta hydrolase -
  GMB29_RS04840 (GMB29_04840) - 950915..951715 (+) 801 WP_136355214.1 NAD(P)-dependent oxidoreductase -
  GMB29_RS04845 (GMB29_04845) med 951796..952749 (+) 954 WP_136355213.1 BMP family ABC transporter substrate-binding protein Regulator
  GMB29_RS04850 (GMB29_04850) comZ 952770..952952 (+) 183 WP_136355211.1 ComZ family protein Regulator
  GMB29_RS04855 (GMB29_04855) - 953029..953328 (-) 300 WP_136355209.1 hypothetical protein -
  GMB29_RS04860 (GMB29_04860) - 953636..954568 (+) 933 WP_136355207.1 beta-ketoacyl-ACP synthase III -
  GMB29_RS04865 (GMB29_04865) fabF 954772..956013 (+) 1242 WP_136355205.1 beta-ketoacyl-ACP synthase II -
  GMB29_RS04870 (GMB29_04870) - 956342..957121 (+) 780 WP_136355203.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6913.10 Da        Isoelectric Point: 4.5284

>NTDB_id=402080 GMB29_RS04850 WP_136355211.1 952770..952952(+) (comZ) [Metabacillus sediminilitoris strain DSL-17]
MEQHPKAMEFMQIAMKYLPEAKEKFEGSGIELSLETIQPMMELFTKVMGEAYELGKKDAQ

Nucleotide


Download         Length: 183 bp        

>NTDB_id=402080 GMB29_RS04850 WP_136355211.1 952770..952952(+) (comZ) [Metabacillus sediminilitoris strain DSL-17]
ATGGAACAGCATCCAAAAGCAATGGAATTTATGCAAATCGCAATGAAGTACTTGCCAGAGGCTAAAGAAAAATTTGAAGG
ATCTGGTATTGAATTATCATTGGAAACGATTCAGCCTATGATGGAGCTTTTCACGAAAGTGATGGGAGAAGCTTATGAAT
TAGGGAAAAAAGACGCACAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(6-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4BV43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

74.138

96.667

0.717

Multiple sequence alignment