Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HUT18_RS07950 Genome accession   NZ_CP054918
Coordinates   1904619..1906355 (+) Length   578 a.a.
NCBI ID   WP_176099070.1    Uniprot ID   -
Organism   Streptomyces sp. NA04227     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1899619..1911355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT18_RS07920 (HUT18_07920) - 1900068..1900706 (-) 639 WP_176099065.1 DUF6230 family protein -
  HUT18_RS07925 (HUT18_07925) - 1900996..1901631 (-) 636 WP_176099067.1 DUF6230 family protein -
  HUT18_RS07940 (HUT18_07940) - 1902315..1902617 (+) 303 WP_176104357.1 YtxH domain-containing protein -
  HUT18_RS07945 (HUT18_07945) - 1902858..1904303 (+) 1446 WP_176099069.1 FGGY family carbohydrate kinase -
  HUT18_RS07950 (HUT18_07950) rcrP 1904619..1906355 (+) 1737 WP_176099070.1 ABC transporter ATP-binding protein Regulator
  HUT18_RS07955 (HUT18_07955) rcrQ 1906355..1908289 (+) 1935 WP_176099072.1 ABC transporter ATP-binding protein Regulator
  HUT18_RS07960 (HUT18_07960) - 1908424..1909293 (-) 870 WP_176099074.1 alpha/beta fold hydrolase -
  HUT18_RS07965 (HUT18_07965) - 1909482..1909766 (+) 285 Protein_1583 dTDP-4-dehydrorhamnose reductase -
  HUT18_RS07970 (HUT18_07970) - 1909883..1911265 (-) 1383 WP_368661509.1 lipase family protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62572.75 Da        Isoelectric Point: 5.4145

>NTDB_id=402080 HUT18_RS07950 WP_176099070.1 1904619..1906355(+) (rcrP) [Streptomyces sp. NA04227]
MLIRLLRAHLGPYRKPIALLVALQFLQTCATLYLPTVNADIIDNGVVEGDTGYILSFGALMIAVTVVQMICNIGAVWYGA
RTASAIGRDIRAAVFARVQSFSARELGAFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIVMALGLDVPLSSV
LLAVVPVLGLGVFLIVRKLRPLYRGMQERLDTVNRVLREQITGNRVIRAFVRDDYEKQRFHGVSSDLTEVSLGAGRLMAL
MFPLVMTVVNISSIAVVWFGAHRIDEGAMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PTDGVRELPAAAGLEIRGGGFRYPGAEEPVLRAVDLFAGAGETVAVIGSTGSGKSTLLGLVPRLFDATEGEVLVSGVDVR
EIDPRTLARTVGLVPQKPYLFAGTVASNLRYGNPEATDEELWQALEVAQAREFVEQKLEGGLNAPIAQGGTNVSGGQRQR
LAIARTLVQRPRIYLFDDSFSALDYATDAALRRAMSRETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHQLMES
NETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=402080 HUT18_RS07950 WP_176099070.1 1904619..1906355(+) (rcrP) [Streptomyces sp. NA04227]
GTGCTCATACGACTTCTGCGGGCCCACCTGGGCCCGTACCGCAAACCCATCGCCCTGCTCGTGGCGCTGCAGTTCCTGCA
GACGTGCGCCACCCTCTACCTGCCCACCGTGAACGCGGACATCATCGACAACGGTGTCGTCGAGGGGGACACGGGTTACA
TCCTGTCCTTCGGCGCGCTGATGATCGCCGTCACGGTCGTACAGATGATCTGCAACATCGGGGCCGTCTGGTACGGCGCC
CGTACGGCCTCCGCGATCGGGCGGGACATCCGCGCCGCCGTCTTCGCGCGGGTGCAGTCCTTCTCCGCCCGGGAACTCGG
CGCGTTCGGGGCACCCTCGCTGATCACCCGGACCACCAACGACGTTCAGCAGGTCCAGATGCTGGTCCTGATGTCGTTCA
CGCTGATGGTCTCCGCGCCGATCATGTGTGTCGGCGGCATCGTGATGGCCCTCGGCCTGGACGTACCGCTCTCCTCCGTC
CTGCTCGCCGTGGTGCCGGTGCTCGGCCTCGGCGTCTTTCTGATCGTGCGCAAGCTGCGGCCGCTGTACCGCGGCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGCGCCTTCGTCCGCGACG
ACTACGAGAAGCAGCGTTTCCACGGCGTCAGTTCGGACCTGACCGAGGTCTCGCTCGGCGCCGGACGGCTGATGGCACTG
ATGTTCCCGCTCGTGATGACGGTCGTGAACATCTCCTCCATCGCCGTGGTCTGGTTCGGGGCGCACCGCATCGACGAGGG
CGCGATGGAGATCGGCGCGCTCACGGCCTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTGCTCGGCACCGAGAGCAGCGTGGTGCCG
CCCACCGACGGCGTACGGGAACTGCCCGCGGCCGCCGGCCTGGAGATCCGCGGCGGGGGCTTCCGCTACCCGGGCGCCGA
GGAGCCCGTGCTGAGGGCCGTCGACCTGTTCGCGGGGGCCGGTGAGACGGTGGCAGTGATCGGCTCGACCGGCAGCGGCA
AGTCGACCCTGCTCGGCCTGGTCCCCCGGCTCTTCGACGCCACCGAGGGCGAGGTCCTGGTGAGCGGCGTCGACGTACGC
GAGATCGACCCGCGCACGCTGGCCCGTACGGTCGGCCTCGTCCCGCAGAAGCCGTATCTCTTCGCCGGAACCGTGGCGAG
CAATCTGCGCTACGGCAACCCGGAGGCCACCGACGAGGAGCTGTGGCAGGCCCTGGAGGTCGCGCAGGCACGGGAGTTCG
TGGAGCAGAAGCTGGAGGGCGGCCTCAACGCACCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGG
CTCGCGATCGCGCGGACGCTGGTGCAGCGGCCGCGCATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCAC
CGACGCGGCGCTGCGCCGGGCGATGAGCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCA
TCCGCGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGTGTGGTGGGCACCGGACGCCACCACCAGCTCATGGAGAGC
AACGAGACCTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(353-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.702

98.616

0.401

Multiple sequence alignment