Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   GMB29_RS04845 Genome accession   NZ_CP046266
Coordinates   951796..952749 (+) Length   317 a.a.
NCBI ID   WP_136355213.1    Uniprot ID   -
Organism   Metabacillus sediminilitoris strain DSL-17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 946796..957749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMB29_RS04820 (GMB29_04820) argF 947666..948610 (+) 945 WP_136355220.1 ornithine carbamoyltransferase -
  GMB29_RS04825 (GMB29_04825) - 949062..949241 (+) 180 WP_136355218.1 YjzC family protein -
  GMB29_RS04830 (GMB29_04830) - 949364..949555 (-) 192 WP_136355216.1 YjzD family protein -
  GMB29_RS04835 (GMB29_04835) - 950093..950827 (+) 735 WP_136355281.1 alpha/beta hydrolase -
  GMB29_RS04840 (GMB29_04840) - 950915..951715 (+) 801 WP_136355214.1 NAD(P)-dependent oxidoreductase -
  GMB29_RS04845 (GMB29_04845) med 951796..952749 (+) 954 WP_136355213.1 BMP family ABC transporter substrate-binding protein Regulator
  GMB29_RS04850 (GMB29_04850) comZ 952770..952952 (+) 183 WP_136355211.1 ComZ family protein Regulator
  GMB29_RS04855 (GMB29_04855) - 953029..953328 (-) 300 WP_136355209.1 hypothetical protein -
  GMB29_RS04860 (GMB29_04860) - 953636..954568 (+) 933 WP_136355207.1 beta-ketoacyl-ACP synthase III -
  GMB29_RS04865 (GMB29_04865) fabF 954772..956013 (+) 1242 WP_136355205.1 beta-ketoacyl-ACP synthase II -
  GMB29_RS04870 (GMB29_04870) - 956342..957121 (+) 780 WP_136355203.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35652.11 Da        Isoelectric Point: 4.1842

>NTDB_id=402079 GMB29_RS04845 WP_136355213.1 951796..952749(+) (med) [Metabacillus sediminilitoris strain DSL-17]
MYKKLGLILILLFSLYGCGQPTTTGNLQKVGLLVQETIDEKVWGMKGYEGLLKIQSDLGVDVFYKEGMNEDIKIRHAIEE
FQQNDVNLIFGHGSEFAGSFQAISKDYPDIHFVLFNSDVSGRNITSLNFESHAMGFFGGMVAGEMTNTKKIGVLAAFEWQ
PEIDGFFEGAYFQNENVHVNIKYVQDWNNTADALPLLEEMIDDNVDIVYVAGDGYNIPVIERLKEEGLYAIGYVNDQADL
GNRTVLTSTVQHIDELYVNVAKSFNKGELENGEVYFDFKDGVISMGEFSPLVDQEFQSNLNEHIEEYKKSGLLPNQL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=402079 GMB29_RS04845 WP_136355213.1 951796..952749(+) (med) [Metabacillus sediminilitoris strain DSL-17]
ATGTACAAAAAGCTCGGACTTATCCTCATATTACTTTTTTCGCTTTATGGTTGTGGACAACCTACAACAACTGGCAATCT
TCAAAAGGTCGGTTTACTTGTTCAGGAAACAATTGATGAAAAAGTTTGGGGTATGAAAGGCTATGAAGGGCTATTAAAAA
TTCAATCAGATCTAGGTGTAGATGTATTTTATAAAGAAGGTATGAACGAAGACATTAAGATTCGTCATGCAATTGAGGAA
TTTCAACAAAATGATGTAAATCTTATTTTTGGTCATGGCAGCGAATTTGCAGGTTCATTTCAAGCGATTAGTAAAGATTA
TCCGGATATTCATTTTGTTTTATTTAATTCTGATGTATCAGGTAGAAATATAACAAGTCTTAATTTCGAATCACATGCAA
TGGGCTTTTTTGGCGGGATGGTTGCAGGTGAAATGACAAATACAAAAAAAATAGGCGTGTTAGCTGCTTTCGAGTGGCAG
CCGGAAATTGATGGCTTTTTTGAAGGTGCATATTTTCAAAATGAAAATGTTCATGTCAATATTAAGTATGTGCAAGATTG
GAATAACACAGCAGATGCATTGCCGCTTTTAGAAGAAATGATCGATGACAATGTCGACATTGTGTACGTTGCAGGGGACG
GGTATAATATACCAGTGATCGAGCGCCTAAAAGAAGAAGGTTTATATGCGATCGGATATGTCAATGATCAGGCTGATTTA
GGCAATAGAACTGTGTTAACAAGTACTGTCCAGCATATTGACGAATTATATGTAAATGTGGCAAAATCCTTTAATAAAGG
CGAGTTAGAAAATGGTGAGGTTTATTTCGACTTCAAAGACGGTGTCATCTCGATGGGAGAGTTCAGTCCTCTTGTTGATC
AAGAATTTCAATCAAACCTGAATGAACACATTGAAGAATATAAAAAAAGTGGACTACTTCCAAATCAGTTATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

50.637

99.054

0.502

Multiple sequence alignment