Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HUT19_RS21500 Genome accession   NZ_CP054916
Coordinates   4902639..4903238 (+) Length   199 a.a.
NCBI ID   WP_176182031.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4897639..4908238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS21475 (HUT19_21475) - 4897814..4899073 (+) 1260 WP_176182028.1 site-specific integrase -
  HUT19_RS21490 (HUT19_21490) - 4899469..4901895 (+) 2427 WP_176182029.1 DNA polymerase III subunit gamma and tau -
  HUT19_RS21495 (HUT19_21495) - 4902161..4902496 (+) 336 WP_176182030.1 YbaB/EbfC family nucleoid-associated protein -
  HUT19_RS21500 (HUT19_21500) recR 4902639..4903238 (+) 600 WP_176182031.1 recombination mediator RecR Machinery gene
  HUT19_RS21505 (HUT19_21505) - 4903231..4903899 (+) 669 WP_176182032.1 DUF5063 domain-containing protein -
  HUT19_RS21510 (HUT19_21510) - 4904230..4905510 (+) 1281 WP_176182033.1 aspartate kinase -
  HUT19_RS21515 (HUT19_21515) - 4905507..4906586 (+) 1080 WP_176182034.1 aspartate-semialdehyde dehydrogenase -
  HUT19_RS21520 (HUT19_21520) - 4907028..4907603 (+) 576 WP_254885695.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21771.03 Da        Isoelectric Point: 4.9976

>NTDB_id=402030 HUT19_RS21500 WP_176182031.1 4902639..4903238(+) (recR) [Streptomyces sp. NA02950]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQSEPTDVRRLAHALTEVKDKVRFCAVCGNVAEAEQCRVCQDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=402030 HUT19_RS21500 WP_176182031.1 4902639..4903238(+) (recR) [Streptomyces sp. NA02950]
GTGTACGAGGGCGTGGTCCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCTCAGCGGAT
CGCCTTCCACATCCTTCAGTCCGAGCCGACCGACGTCCGCCGCCTCGCTCATGCGCTGACCGAGGTCAAGGACAAGGTGC
GGTTCTGCGCGGTGTGCGGGAACGTCGCCGAGGCCGAGCAGTGCCGGGTCTGTCAGGACCCGCGCCGCGACCCGGCGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTGGTGGCGATTGAGCGGACCCGCGAGTTCCGCGGTCGTTACCACGTGCTGGG
CGGAGCGATCAGCCCGATCGAGGGCGTGGGCCCGGACGATCTGCGGATCAGGGAGCTGCTGGCCCGGCTCGCGGACGGGA
CGGTCACCGAACTCATCCTGGCCACCGACCCGAACCTGGAGGGCGAGGCCACCGCCACGTATCTCGCGCGCATGGTCAAA
CCCATGGGTTTGAAGGTCACACGCCTGGCCAGTGGTCTCCCAGTCGGGGGGGACCTGGAGTATGCCGACGAGGTCACGCT
GGGTCGTGCCTTCGAAGGGAGAAGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452