Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HUT19_RS18080 Genome accession   NZ_CP054916
Coordinates   4190174..4191607 (+) Length   477 a.a.
NCBI ID   WP_176181482.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4185174..4196607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS18060 (HUT19_18060) - 4185239..4186084 (-) 846 WP_176181478.1 sugar phosphate isomerase/epimerase -
  HUT19_RS18065 (HUT19_18065) - 4186247..4187176 (-) 930 WP_176181479.1 Ppx/GppA phosphatase family protein -
  HUT19_RS18070 (HUT19_18070) - 4187260..4188123 (+) 864 WP_176181480.1 hypothetical protein -
  HUT19_RS18075 (HUT19_18075) - 4188181..4189992 (-) 1812 WP_176181481.1 sigma-70 family RNA polymerase sigma factor -
  HUT19_RS18080 (HUT19_18080) radA/sms 4190174..4191607 (+) 1434 WP_176181482.1 DNA repair protein RadA Machinery gene
  HUT19_RS18085 (HUT19_18085) disA 4191853..4192911 (+) 1059 WP_176187005.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  HUT19_RS18090 (HUT19_18090) - 4193003..4193848 (-) 846 WP_176181483.1 hypothetical protein -
  HUT19_RS18095 (HUT19_18095) - 4194088..4195011 (+) 924 WP_254885635.1 A/G-specific adenine glycosylase -
  HUT19_RS18100 (HUT19_18100) - 4195238..4195849 (+) 612 WP_176181484.1 SigE family RNA polymerase sigma factor -
  HUT19_RS18105 (HUT19_18105) - 4195876..4196538 (+) 663 WP_254885636.1 hypothetical protein -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 50265.29 Da        Isoelectric Point: 7.7072

>NTDB_id=402021 HUT19_RS18080 WP_176181482.1 4190174..4191607(+) (radA/sms) [Streptomyces sp. NA02950]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGAPAVRTTAPGRVTSAALPIGQVDGRQATARSTGV
AELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAAGDDHRTLYITGEESASQVRLRADRIGALSEQLYLAAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LHFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
TQIPSPRRTTSGLETSRVSMMLAVLEQRGRINALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAARLGFTHALVPSDAGRIPDGMRVLEVADIGDALRVLPRRRDRGERGERTRAAAEDRG

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=402021 HUT19_RS18080 WP_176181482.1 4190174..4191607(+) (radA/sms) [Streptomyces sp. NA02950]
ATGGCTGCCCGTAGCTCCTCCCGCTCATCCGCCAAGGACCGGCCCTCCTACCGCTGCACCGAATGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAGTGCCAGGCATGGGGCACGGTCGAGGAGTTCGGCGCACCCGCGGTGCGGACCACCG
CGCCCGGCCGGGTCACCTCGGCCGCGCTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCCCGGTCCACCGGGGTG
GCCGAGCTGGACCGGGTGCTCGGCGGCGGGCTGGTGCCCGGTGCCGTGGTGCTGCTCGCCGGGGAGCCGGGGGTGGGCAA
GTCCACGCTGCTGCTCGACGTCGCCGCCAAGGCCGCCGGCGACGACCACCGCACCCTGTACATCACCGGGGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCTCTCAGCGAGCAGCTGTACCTCGCCGCGGAGACCGATCTCTCC
GCCGTCCTCGGCCATCTCGACTCGGTCAAGCCGTCCCTGCTGGTGCTGGACTCCGTGCAGACCGTCGCCTCCCCCGAGAT
CGACGGCGCTCCCGGCGGTATGGCGCAGGTCCGCGAGGTGGCCGGGGCCCTGATCCGCGTCTCCAAGGAGCGCGGTATGT
CCACCCTGCTGGTGGGCCATGTGACCAAGGACGGCGCGATCGCGGGTCCCCGGCTGCTGGAGCATCTGGTCGACGTGGTG
CTGCACTTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGGGTGAAGAACCGCTACGGGGCCACCGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGCCGCGACGAGC
CGGTGCCGGGCACCTGTCTGACCGTCACCCTGGAGGGGCGCAGGCCGCTGGTGGCCGAGGTCCAGGCGCTCACCGTGGAC
ACCCAGATCCCCTCCCCCCGCCGCACCACCTCGGGGCTCGAGACCTCGCGGGTGTCGATGATGCTCGCCGTGCTGGAGCA
GCGCGGCCGGATCAACGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTGGGCGGGGTGAAGCTGACCGAGCCCGCCG
CGGACCTCGCCGTGGCCCTGGCGCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTGGCCATCGGCGAG
GTGGGGCTCGCGGGCGAGGTCCGCCGGGTCACGGGGGTGCAGCGGCGGCTGGCCGAGGCCGCCCGGCTCGGCTTCACGCA
CGCCCTCGTCCCGTCCGACGCGGGCCGGATCCCCGACGGGATGCGGGTGCTGGAGGTGGCGGACATCGGGGACGCGCTGC
GGGTGCTGCCCCGGCGCCGGGACCGGGGTGAGCGGGGTGAGCGGACCCGGGCGGCCGCGGAGGACCGCGGCTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(85-225)

Subunit ChlI of Mg-chelatase (ChlI)

(373-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.592

94.969

0.423
  radA Streptococcus mitis SK321

42.889

94.34

0.405
  radA Streptococcus pneumoniae D39

42.667

94.34

0.403
  radA Streptococcus pneumoniae TIGR4

42.667

94.34

0.403
  radA Streptococcus mitis NCTC 12261

42.667

94.34

0.403
  radA Streptococcus pneumoniae R6

42.667

94.34

0.403
  radA Streptococcus pneumoniae Rx1

42.667

94.34

0.403

Multiple sequence alignment