Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HUT19_RS11820 Genome accession   NZ_CP054916
Coordinates   2827957..2830170 (-) Length   737 a.a.
NCBI ID   WP_176180434.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2822957..2835170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS11790 (HUT19_11790) rnc 2823596..2824483 (-) 888 WP_176180429.1 ribonuclease III -
  HUT19_RS11795 (HUT19_11795) rpmF 2824503..2824676 (-) 174 WP_009714764.1 50S ribosomal protein L32 -
  HUT19_RS11800 (HUT19_11800) - 2824679..2825269 (-) 591 WP_176180430.1 DUF177 domain-containing protein -
  HUT19_RS11805 (HUT19_11805) - 2825443..2826624 (-) 1182 WP_176180431.1 cell division initiation protein -
  HUT19_RS11810 (HUT19_11810) coaD 2826726..2827235 (-) 510 WP_176180432.1 pantetheine-phosphate adenylyltransferase -
  HUT19_RS11815 (HUT19_11815) rsmD 2827232..2827819 (-) 588 WP_176180433.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  HUT19_RS11820 (HUT19_11820) recG 2827957..2830170 (-) 2214 WP_176180434.1 ATP-dependent DNA helicase RecG Machinery gene
  HUT19_RS11825 (HUT19_11825) - 2830211..2832049 (-) 1839 WP_176180435.1 DAK2 domain-containing protein -
  HUT19_RS11830 (HUT19_11830) rpmB 2832271..2832456 (+) 186 WP_009714771.1 50S ribosomal protein L28 -
  HUT19_RS11835 (HUT19_11835) thiD 2832614..2833465 (-) 852 WP_176180436.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HUT19_RS11840 (HUT19_11840) - 2833476..2834444 (-) 969 WP_176180437.1 thiamine-phosphate kinase -
  HUT19_RS11845 (HUT19_11845) - 2834582..2834815 (+) 234 WP_014055158.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79599.17 Da        Isoelectric Point: 6.1423

>NTDB_id=402006 HUT19_RS11820 WP_176180434.1 2827957..2830170(-) (recG) [Streptomyces sp. NA02950]
MDCVPVLEEPLKKVLGGNTAKVMADHLGLHTVGDLLHHYPRRYAERGELTRLSDLPLDEHVTVVAQVADARVLKFNGGRG
QRLEVTITDGSGRLQLVFFGKGVHKPRTQLVPGTRAMFAGKVTVFNHKRQLAHPEFKTLGANSGADAVEAFANQLLPLYP
ACKQMESWQIQQAVDTVLGPAGAEDAVLADLVDPLPEALRAGRGLATLPEALRGIHRPRTKADIAAARDRLKWDEAFVLQ
VALARRRRADAQLPAAPRRPVQDGLLDAFDARLPFTLTDGQRRVSEQIFADLATEHPMHRLLQGEVGSGKTMVALRAMLG
VVDAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAEQGTKVVLLTGSMGAAARRQALLDLVTGEAGIVIGTHAL
IEDKVQFHDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVP
AKDKPHFLARAWERVREEVAGGHQAYVVCPRIGDEEDQAKAAKEKTAEDEAEKRPPLAVLDVAEQLAKGPLRDLRVEVLH
GRMQPEAKDEVMRRFAAGAVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMPEAA
PARTRLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRVLAVIDDEEVIAAAREEATAVVAADPELNGYPELRT
ALDALLDEEREEFLDKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=402006 HUT19_RS11820 WP_176180434.1 2827957..2830170(-) (recG) [Streptomyces sp. NA02950]
ATGGACTGCGTGCCCGTGCTCGAAGAACCCCTGAAGAAGGTCCTCGGCGGCAACACCGCGAAGGTGATGGCCGACCACCT
CGGCCTGCACACCGTCGGCGATCTGCTCCACCACTACCCGCGGCGGTACGCCGAGCGCGGCGAGCTGACCCGGCTGTCCG
ATCTGCCCCTGGACGAGCATGTGACCGTCGTCGCGCAGGTCGCGGACGCCCGGGTGCTGAAGTTCAACGGAGGGCGCGGA
CAGCGCCTCGAGGTCACCATCACCGACGGCAGCGGCCGCCTCCAGCTCGTCTTCTTCGGCAAGGGCGTCCACAAACCCCG
CACCCAGCTGGTCCCCGGGACCCGCGCCATGTTCGCGGGCAAGGTCACGGTCTTCAACCACAAGCGCCAGCTGGCCCATC
CGGAGTTCAAGACCCTGGGTGCGAACAGCGGCGCGGACGCCGTCGAGGCGTTCGCCAACCAGCTGCTGCCGCTGTATCCG
GCGTGCAAGCAGATGGAGTCCTGGCAGATCCAGCAGGCCGTGGACACCGTCCTGGGGCCCGCGGGCGCCGAGGACGCCGT
CCTGGCCGATCTGGTGGACCCGCTGCCCGAGGCCCTGCGGGCGGGCCGGGGCCTGGCCACGCTGCCCGAGGCGCTGCGCG
GCATCCACCGGCCGCGCACCAAGGCGGACATCGCCGCGGCCAGGGACCGCCTCAAGTGGGACGAGGCGTTCGTCCTCCAG
GTCGCCCTCGCCCGCCGCCGCCGGGCCGACGCCCAACTGCCCGCCGCCCCGCGCCGCCCCGTCCAGGACGGCCTGCTCGA
CGCCTTCGACGCCCGGCTGCCGTTCACCCTCACCGACGGCCAGCGCCGGGTCAGCGAGCAGATCTTCGCCGACCTGGCCA
CCGAACACCCCATGCACCGGCTGCTCCAGGGCGAGGTCGGCTCCGGAAAGACCATGGTCGCGCTGCGGGCGATGCTCGGT
GTCGTCGACGCCGGGGGCCAGGCGGCCATGCTCGCGCCGACCGAGGTGCTCGCCCAGCAGCACCATCGCTCGATCACCGA
GATGATGGGCGAGCTGGCCGAGGGCGGCATGCTGGGCGGCGCCGAGCAGGGGACCAAGGTGGTGCTGCTCACCGGTTCCA
TGGGCGCCGCTGCCCGCCGTCAGGCCTTGCTGGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGTACCCATGCGCTG
ATCGAGGACAAGGTCCAATTCCACGATCTGGGGCTGGTGGTCGTCGACGAGCAGCACCGCTTCGGCGTCGAGCAGCGGGA
CGCCCTGCGCTCCAAGGGCAAGCAGCCCCCGCATCTGCTGGTGATGACGGCCACCCCCATCCCGCGCACCGTGGCCATGA
CCGTCTTCGGCGACCTGGAGACCTCGGTCCTGGACCAGCTGCCCGCCGGGCGTTCCCCGATCGCCTCCCATGTGGTGCCC
GCCAAGGACAAGCCGCACTTCCTGGCCCGCGCCTGGGAGCGGGTGCGCGAGGAGGTGGCGGGCGGACACCAGGCGTATGT
GGTCTGCCCGCGCATCGGGGACGAGGAGGACCAGGCCAAGGCGGCGAAGGAGAAGACCGCCGAGGACGAGGCGGAGAAGC
GCCCGCCGCTCGCGGTCCTCGATGTCGCCGAGCAGCTCGCCAAGGGCCCGCTGCGCGATCTGCGGGTGGAGGTGCTGCAC
GGCCGGATGCAGCCGGAGGCCAAGGACGAGGTGATGCGCCGCTTCGCCGCGGGTGCGGTCGACGTCCTGGTCGCCACCAC
CGTCATCGAGGTCGGCGTCAACGTCCCCAACGCCACCGCCATGGTGATCATGGACGCCGACCGGTTCGGCGTCTCCCAGC
TGCACCAGCTGCGCGGCCGGGTCGGCCGTGGCTCCGCCCCCGGGCTGTGTCTGCTGGTCACCGAGATGCCCGAGGCCGCC
CCCGCGCGGACGCGGCTGGGCGCGGTCGCCGCCACCCTGGACGGCTTCGAGCTGTCCCGGATCGACCTGGAGCAGCGCCG
CGAGGGCGATGTGCTCGGCCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGGTGCTCGCGGTCATCGACGACGAGGAGG
TGATCGCCGCGGCCCGGGAGGAGGCCACCGCCGTCGTCGCGGCCGATCCGGAGCTGAACGGCTATCCGGAGTTGCGCACC
GCGCTGGACGCCCTGCTGGACGAGGAGCGCGAGGAATTCCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(549-624)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-713)

RecG wedge domain (RecG_wedge)

(15-174)

DEAD/DEAH box helicase (DEAD)

(298-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

37.639

97.693

0.368
  recG Neisseria meningitidis strain C311

38.34

94.844

0.364