Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   GLW17_RS11000 Genome accession   NZ_CP046246
Coordinates   2286839..2288104 (+) Length   421 a.a.
NCBI ID   WP_155224744.1    Uniprot ID   A0AB37D6U2
Organism   Tetragenococcus halophilus strain YJ1     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2281839..2293104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLW17_RS10975 (GLW17_10975) tsf 2282275..2283156 (+) 882 WP_155224741.1 translation elongation factor Ts -
  GLW17_RS10980 (GLW17_10980) pyrH 2283371..2284090 (+) 720 WP_041591846.1 UMP kinase -
  GLW17_RS10985 (GLW17_10985) frr 2284094..2284651 (+) 558 WP_014125333.1 ribosome recycling factor -
  GLW17_RS10990 (GLW17_10990) - 2285084..2285884 (+) 801 WP_155224742.1 isoprenyl transferase -
  GLW17_RS10995 (GLW17_10995) - 2285881..2286687 (+) 807 WP_155224743.1 phosphatidate cytidylyltransferase -
  GLW17_RS11000 (GLW17_11000) eeP 2286839..2288104 (+) 1266 WP_155224744.1 RIP metalloprotease RseP Regulator
  GLW17_RS11005 (GLW17_11005) - 2288189..2289895 (+) 1707 WP_155224745.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46233.02 Da        Isoelectric Point: 4.1430

>NTDB_id=401899 GLW17_RS11000 WP_155224744.1 2286839..2288104(+) (eeP) [Tetragenococcus halophilus strain YJ1]
MKTLITFLIVFSVVVVIHEFGHFYFAKKSGILVREFSIGMGPKLFSHQAKDGTTYTIRAIPMGGYVRMAGYEDEEELKAG
MPVSLEVNENNEVIKINTSSKVQLENAIPLEVTRYDLTEALEITGFVNGNEDNVASYSVNHEAMIIEEDGTQLRIAPRDV
QFQSAKLWQRMLTNFAGPMNNFLLTIVLFIAIVFLQGGVPNEDSTVLGEVDPEGVAATAGLRSGDEIVAIDQEEVSSWPE
LQQTIQQQPDEELSLEVNRDDQTFSVDATPESVESGNQDIGQLGVQASLKTGFWDKVVGGVKESWDMLVQILAALRNLVT
NFSLDQLGGPVAIFQMSDQAAQQGAMTVLLLTAMISVNLGIVNLLPIPGLDGGKLLLNIVEAIRGKPISEEKEGMITLVG
FGLLMLLMVLVTWNDIQRFFF

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=401899 GLW17_RS11000 WP_155224744.1 2286839..2288104(+) (eeP) [Tetragenococcus halophilus strain YJ1]
ATGAAGACATTGATTACATTTTTAATCGTCTTCTCAGTAGTTGTGGTAATACATGAATTTGGACATTTTTATTTTGCTAA
GAAATCGGGCATTTTAGTCCGTGAATTTTCTATCGGCATGGGTCCTAAGCTATTCAGCCACCAAGCTAAAGACGGTACGA
CTTACACCATACGAGCCATACCGATGGGTGGTTATGTTCGGATGGCAGGCTATGAGGATGAAGAAGAACTAAAAGCTGGA
ATGCCGGTATCTTTGGAAGTAAATGAGAATAACGAAGTCATTAAAATCAATACAAGTTCAAAAGTACAGTTAGAAAATGC
GATCCCTTTAGAAGTGACTCGTTATGATTTGACTGAGGCGCTTGAAATTACAGGATTTGTTAATGGAAATGAAGATAATG
TAGCAAGCTATTCAGTAAATCATGAGGCAATGATTATTGAAGAAGACGGTACGCAGCTGCGTATCGCACCTAGAGATGTA
CAGTTTCAGTCTGCTAAGTTATGGCAAAGAATGTTGACAAATTTCGCGGGACCTATGAATAATTTCTTATTAACGATTGT
GTTATTCATTGCCATTGTATTTTTACAAGGCGGAGTTCCTAATGAAGACTCAACAGTACTTGGTGAAGTAGATCCTGAAG
GTGTAGCAGCAACAGCCGGTTTAAGGTCGGGGGATGAAATTGTAGCGATCGACCAAGAAGAAGTATCAAGTTGGCCTGAA
CTGCAACAAACGATTCAACAACAACCTGATGAAGAGTTATCGCTTGAAGTTAACCGGGATGACCAAACTTTTTCTGTAGA
TGCAACGCCTGAAAGCGTAGAATCGGGTAATCAAGATATTGGGCAATTGGGCGTACAAGCATCGCTTAAAACTGGTTTTT
GGGACAAAGTAGTCGGCGGTGTGAAAGAAAGTTGGGACATGCTTGTCCAAATTTTAGCTGCCTTAAGAAACTTGGTAACT
AATTTTAGTTTGGATCAATTAGGCGGTCCAGTTGCTATTTTCCAAATGTCTGATCAAGCTGCTCAACAAGGCGCTATGAC
AGTCTTACTTTTGACCGCTATGATATCAGTCAATTTAGGTATCGTGAACTTACTACCCATTCCTGGTTTGGACGGTGGAA
AATTATTACTTAATATAGTCGAAGCTATACGTGGAAAACCAATTAGTGAAGAAAAAGAAGGGATGATTACCTTAGTAGGT
TTTGGTTTGTTGATGTTATTAATGGTATTAGTCACTTGGAATGATATCCAGCGCTTTTTCTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-407)

PDZ domain (PDZ_6)

(209-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

51.168

100

0.52
  eeP Streptococcus thermophilus LMD-9

51.168

100

0.52

Multiple sequence alignment