Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   SSAL_RS06280 Genome accession   NC_017594
Coordinates   1376631..1377287 (+) Length   218 a.a.
NCBI ID   WP_014633306.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1371631..1382287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS06250 (Ssal_01381) - 1371920..1372189 (-) 270 WP_002884134.1 DUF3165 family protein -
  SSAL_RS06255 (Ssal_01382) typA 1372209..1374059 (-) 1851 WP_002884130.1 translational GTPase TypA -
  SSAL_RS06260 (Ssal_01383) - 1374204..1375172 (-) 969 WP_014633303.1 ROK family glucokinase -
  SSAL_RS06265 - 1375165..1375371 (-) 207 WP_004182729.1 YqgQ family protein -
  SSAL_RS06270 (Ssal_01385) - 1375458..1375910 (-) 453 WP_004182730.1 Fur family transcriptional regulator -
  SSAL_RS06275 (Ssal_01386) - 1376000..1376521 (-) 522 WP_004182731.1 Dps family protein -
  SSAL_RS06280 (Ssal_01387) cclA/cilC 1376631..1377287 (+) 657 WP_014633306.1 A24 family peptidase Machinery gene
  SSAL_RS06285 (Ssal_01388) - 1377319..1378677 (-) 1359 WP_013990793.1 serine hydrolase -
  SSAL_RS06290 (Ssal_01389) sodA 1378775..1379380 (-) 606 WP_004182735.1 superoxide dismutase SodA -
  SSAL_RS06295 (Ssal_01390) holA 1379476..1380510 (-) 1035 WP_014633307.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25211.55 Da        Isoelectric Point: 8.3213

>NTDB_id=40189 SSAL_RS06280 WP_014633306.1 1376631..1377287(+) (cclA/cilC) [Streptococcus salivarius 57.I]
MLTIIYFFLGASLGSFIGLICDRFPEKSIIFPSSHCSHCKHQLRFFEMIPILSQLFLRSRCRSCQTSIPLRYLFMELFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKHKSYPLLIWIVGTLPLLFMGNHYLTFTLGLILAIISYIKRLNIGEGDFL
YLASASLIFPLSKTLLIIEIACLLGLAYFLLRRNLKEYIAFVPFLFLGIVLLTFCSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=40189 SSAL_RS06280 WP_014633306.1 1376631..1377287(+) (cclA/cilC) [Streptococcus salivarius 57.I]
ATGTTAACTATCATTTATTTTTTTCTGGGAGCCTCTTTAGGTTCATTTATCGGACTGATTTGTGATCGTTTCCCTGAGAA
GTCGATTATTTTTCCTAGTAGTCACTGTAGTCATTGCAAGCATCAGTTGCGTTTTTTCGAGATGATCCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGATCATGTCAGACTTCTATCCCTCTTCGTTACCTCTTTATGGAACTATTTTGTGGA
GTAATATGCCTGCTATATTTCTATGACTTTTTGAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCAAT
TTTTGATTTGAAGCATAAATCCTATCCGCTTCTGATTTGGATAGTTGGAACACTCCCGCTCCTATTCATGGGAAACCACT
ATCTCACTTTTACCTTAGGACTCATATTAGCAATTATATCCTATATTAAACGTTTAAACATTGGAGAAGGCGATTTTCTC
TACTTAGCTAGTGCCTCACTTATTTTCCCACTTTCAAAAACACTACTAATTATTGAAATTGCCTGCCTATTAGGACTAGC
TTACTTCCTTCTACGAAGAAATCTCAAGGAATACATCGCATTTGTTCCATTTCTTTTTCTCGGGATAGTACTCCTTACTT
TTTGTTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus pneumoniae TIGR4

41.589

98.165

0.408
  cclA/cilC Streptococcus mitis SK321

41.121

98.165

0.404
  cclA/cilC Streptococcus mitis NCTC 12261

41.121

98.165

0.404
  cclA/cilC Streptococcus pneumoniae Rx1

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae D39

40.654

98.165

0.399
  cclA/cilC Streptococcus pneumoniae R6

40.654

98.165

0.399

Multiple sequence alignment