Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   GLW17_RS03820 Genome accession   NZ_CP046246
Coordinates   829873..830577 (+) Length   234 a.a.
NCBI ID   WP_061840873.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain YJ1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 824873..835577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLW17_RS03785 (GLW17_03785) - 825243..825674 (-) 432 WP_061840880.1 DUF1772 domain-containing protein -
  GLW17_RS03790 (GLW17_03790) - 825985..826509 (-) 525 WP_061840879.1 GNAT family N-acetyltransferase -
  GLW17_RS03795 (GLW17_03795) - 826523..827116 (-) 594 WP_061840878.1 TetR/AcrR family transcriptional regulator -
  GLW17_RS03800 (GLW17_03800) - 827214..827489 (-) 276 WP_061840877.1 hypothetical protein -
  GLW17_RS03805 (GLW17_03805) - 827495..828262 (-) 768 WP_061840876.1 ABC transporter permease -
  GLW17_RS03810 (GLW17_03810) - 828259..828969 (-) 711 WP_061840875.1 ABC transporter permease -
  GLW17_RS03815 (GLW17_03815) - 828966..829721 (-) 756 WP_061840874.1 ABC transporter ATP-binding protein -
  GLW17_RS03820 (GLW17_03820) scnR 829873..830577 (+) 705 WP_061840873.1 response regulator transcription factor Regulator
  GLW17_RS03825 (GLW17_03825) - 830579..831991 (+) 1413 WP_061840872.1 sensor histidine kinase -
  GLW17_RS03830 (GLW17_03830) - 832160..833485 (-) 1326 WP_069029373.1 PLP-dependent aminotransferase family protein -
  GLW17_RS03835 (GLW17_03835) - 833630..834541 (+) 912 WP_061840870.1 DMT family transporter -
  GLW17_RS03840 (GLW17_03840) - 835341..835445 (+) 105 WP_128973736.1 type I toxin-antitoxin system Fst family toxin -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26575.81 Da        Isoelectric Point: 4.7780

>NTDB_id=401880 GLW17_RS03820 WP_061840873.1 829873..830577(+) (scnR) [Tetragenococcus halophilus strain YJ1]
MNEDYLKEKRILIVDDEPELLEMVVSFLKEEGFKQIDTANTVKKAVEVVQKTAPDLAILDVMLPDGDGFSLMKELKQTTD
FATIFLTARGEDTDRLTGLGLGADDYLVKPFLPKELVFRVLAILRRTYKEEPTLVQLKNCQIDFARAEIIKEEETLFLTA
KEHDLLKALYRNAGRIVTIDALCEAAWGENPFGYENTLMAHIRRIRQKIEKQPSNPVSLITVKGLGYKLIVEDS

Nucleotide


Download         Length: 705 bp        

>NTDB_id=401880 GLW17_RS03820 WP_061840873.1 829873..830577(+) (scnR) [Tetragenococcus halophilus strain YJ1]
ATGAACGAAGATTATCTAAAAGAGAAACGAATTTTGATTGTAGATGATGAACCGGAATTATTAGAAATGGTGGTTTCATT
TTTAAAAGAAGAAGGTTTTAAACAAATTGACACGGCCAATACAGTAAAAAAAGCCGTCGAAGTTGTACAAAAGACGGCCC
CTGATTTAGCGATTTTAGATGTCATGTTGCCTGATGGCGATGGTTTCTCATTAATGAAAGAATTAAAGCAGACAACAGAT
TTTGCGACTATTTTTTTAACTGCACGTGGAGAAGATACAGATCGGCTAACCGGATTAGGCTTGGGCGCAGATGATTATTT
GGTAAAGCCTTTTTTACCCAAAGAATTAGTTTTTAGAGTTTTAGCTATTCTTAGGAGAACTTATAAAGAAGAACCTACTT
TAGTGCAATTAAAAAACTGCCAGATCGACTTTGCTCGTGCCGAGATAATTAAAGAAGAAGAAACACTTTTTTTGACAGCA
AAAGAACATGACTTGCTTAAAGCTTTGTACCGTAATGCTGGGCGTATTGTCACGATAGACGCTTTGTGTGAAGCTGCTTG
GGGCGAAAATCCTTTTGGCTACGAAAATACCTTGATGGCACATATCCGACGGATTCGTCAAAAAATAGAAAAGCAGCCTT
CTAATCCTGTTTCCCTGATTACGGTTAAAGGACTAGGTTACAAATTGATTGTGGAGGATTCTTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-229)

Response regulator receiver domain (Response_reg)

(11-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.444

96.154

0.504
  vicR Streptococcus mutans UA159

36.638

99.145

0.363

Multiple sequence alignment