Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   GLS60_RS06730 Genome accession   NZ_CP046243
Coordinates   1315767..1316420 (-) Length   217 a.a.
NCBI ID   WP_070256814.1    Uniprot ID   -
Organism   Campylobacter lari strain SCHS02     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310767..1321420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLS60_RS06705 (GLS60_06700) - 1311343..1311573 (+) 231 WP_012661646.1 hypothetical protein -
  GLS60_RS06710 (GLS60_06705) - 1311570..1312199 (+) 630 WP_012661645.1 hypothetical protein -
  GLS60_RS07945 - 1312188..1312319 (-) 132 WP_255197728.1 hypothetical protein -
  GLS60_RS06715 (GLS60_06710) - 1312562..1313344 (+) 783 WP_012661644.1 HrcA family transcriptional regulator -
  GLS60_RS06720 (GLS60_06715) grpE 1313341..1313850 (+) 510 WP_070256805.1 nucleotide exchange factor GrpE -
  GLS60_RS06725 (GLS60_06720) dnaK 1313873..1315735 (+) 1863 WP_070256812.1 molecular chaperone DnaK -
  GLS60_RS06730 (GLS60_06725) CJE0566 1315767..1316420 (-) 654 WP_070256814.1 DNA/RNA non-specific endonuclease Regulator
  GLS60_RS06735 (GLS60_06730) - 1316417..1316860 (-) 444 WP_039628413.1 GatB/YqeY domain-containing protein -
  GLS60_RS06740 (GLS60_06735) - 1316871..1317830 (-) 960 WP_070256817.1 exopolyphosphatase -
  GLS60_RS06745 (GLS60_06740) - 1317886..1318653 (+) 768 WP_039628411.1 pyridoxine 5'-phosphate synthase -
  GLS60_RS06750 (GLS60_06745) pdxA 1318650..1319750 (+) 1101 WP_039628410.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  GLS60_RS06755 (GLS60_06750) - 1319797..1321317 (+) 1521 WP_039628409.1 inorganic phosphate transporter -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25911.84 Da        Isoelectric Point: 9.7310

>NTDB_id=401869 GLS60_RS06730 WP_070256814.1 1315767..1316420(-) (CJE0566) [Campylobacter lari strain SCHS02]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPKAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKHIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=401869 GLS60_RS06730 WP_070256814.1 1315767..1316420(-) (CJE0566) [Campylobacter lari strain SCHS02]
ATGAAAAAAGTTTTAACGCTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACCCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGCACTA
AGGCTATTGCTTATAAACTAGAAGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATACAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCAAAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAACAAAGAACTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACACATTAAAAACAATATAGCTATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

58.525

100

0.585
  CJE1441 Campylobacter jejuni RM1221

61.692

92.627

0.571

Multiple sequence alignment