Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   GLS60_RS05255 Genome accession   NZ_CP046243
Coordinates   1027422..1028342 (+) Length   306 a.a.
NCBI ID   WP_070256444.1    Uniprot ID   -
Organism   Campylobacter lari strain SCHS02     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022422..1033342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GLS60_RS05235 (GLS60_05230) - 1023164..1023871 (+) 708 WP_070256437.1 acylneuraminate cytidylyltransferase family protein -
  GLS60_RS05240 (GLS60_05235) - 1023871..1024635 (+) 765 WP_070256441.1 oxidoreductase -
  GLS60_RS05245 (GLS60_05240) - 1024636..1026556 (+) 1921 Protein_1000 motility associated factor glycosyltransferase family protein -
  GLS60_RS05250 (GLS60_05245) - 1026561..1027373 (-) 813 WP_070256443.1 glycosyltransferase family 2 protein -
  GLS60_RS05255 (GLS60_05250) waaF 1027422..1028342 (+) 921 WP_070256444.1 lipopolysaccharide heptosyltransferase II Regulator
  GLS60_RS05260 (GLS60_05255) - 1028343..1029844 (+) 1502 Protein_1003 MBOAT family O-acyltransferase -
  GLS60_RS05265 (GLS60_05260) - 1029853..1030980 (+) 1128 WP_070256448.1 hypothetical protein -
  GLS60_RS05270 (GLS60_05265) - 1031073..1031375 (+) 303 WP_012661929.1 HU family DNA-binding protein -
  GLS60_RS05275 (GLS60_05270) cysK 1031471..1032373 (+) 903 WP_070256450.1 cysteine synthase A -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34844.02 Da        Isoelectric Point: 10.2603

>NTDB_id=401863 GLS60_RS05255 WP_070256444.1 1027422..1028342(+) (waaF) [Campylobacter lari strain SCHS02]
MRIFINLPTWLGDAVMASAAIYAIKEKFNDAEFLFYGSFVSTQVFKNFQNCKVIVENKKQRYSQIFKLRKELKEFDLAIS
FRSAFSSKLILHFIKAKQRFFFDKNQNKNDHQVLKYLKFIEQILDFKANSNSLKLPIKAKSTKKILGINAGAHYGSAKRW
EASYFARVAKEFSHTHKILIFGVESEKKICDEIENLLLNDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKNLLGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=401863 GLS60_RS05255 WP_070256444.1 1027422..1028342(+) (waaF) [Campylobacter lari strain SCHS02]
ATGAGAATTTTTATAAATTTGCCTACTTGGCTTGGTGATGCGGTGATGGCAAGTGCTGCGATATATGCTATAAAAGAAAA
ATTTAACGATGCTGAATTTTTATTTTATGGTTCTTTTGTAAGCACGCAAGTTTTTAAAAATTTTCAAAATTGTAAAGTCA
TAGTAGAAAATAAAAAACAAAGATATTCTCAAATTTTTAAACTCAGAAAAGAACTTAAAGAATTTGATCTAGCCATTAGT
TTTCGCTCAGCCTTTTCTAGTAAGTTGATTTTGCATTTTATCAAGGCAAAGCAAAGATTTTTTTTTGATAAAAATCAAAA
TAAAAACGATCATCAAGTTTTAAAATATTTAAAATTTATAGAGCAAATTTTAGATTTTAAAGCCAATTCAAATTCATTAA
AACTTCCTATAAAAGCAAAATCAACTAAAAAAATTCTAGGCATAAATGCTGGGGCTCATTATGGAAGTGCAAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTTGCAAAAGAATTTAGCCATACCCATAAAATTTTAATTTTTGGCGTAGAAAGTGAAAA
AAAAATTTGCGATGAAATAGAAAATTTATTATTAAATGATGGTATAAAAGCTAAGAATTTATGTGGAAAAACTAGTATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTAAAAACAGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCGCCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGCATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATCTAGCAAAAAATCTTTTAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(66-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.287

100

0.67

Multiple sequence alignment