Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   GGC03_RS13835 Genome accession   NZ_CP046162
Coordinates   3008436..3009041 (+) Length   201 a.a.
NCBI ID   WP_006958122.1    Uniprot ID   A0A2A2CS00
Organism   Vibrio sp. THAF191c     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3003436..3014041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC03_RS13815 (GGC03_13955) - 3003742..3004656 (-) 915 WP_006958118.1 ABC transporter ATP-binding protein -
  GGC03_RS13820 (GGC03_13960) - 3004857..3006527 (-) 1671 WP_006958119.1 SulP family inorganic anion transporter -
  GGC03_RS13825 (GGC03_13965) can 3006882..3007541 (+) 660 WP_006958120.1 carbonate dehydratase -
  GGC03_RS13830 (GGC03_13970) hpt 3007599..3008129 (-) 531 WP_006958121.1 hypoxanthine phosphoribosyltransferase -
  GGC03_RS13835 (GGC03_13975) opaR 3008436..3009041 (+) 606 WP_006958122.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  GGC03_RS13840 (GGC03_13980) lpdA 3009160..3010590 (-) 1431 WP_006958123.1 dihydrolipoyl dehydrogenase -
  GGC03_RS13845 (GGC03_13985) aceF 3010846..3012747 (-) 1902 WP_006958124.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23243.41 Da        Isoelectric Point: 5.2990

>NTDB_id=401744 GGC03_RS13835 WP_006958122.1 3008436..3009041(+) (opaR) [Vibrio sp. THAF191c]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLVVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDDHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=401744 GGC03_RS13835 WP_006958122.1 3008436..3009041(+) (opaR) [Vibrio sp. THAF191c]
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAACAACAACTGATGGAAATCGCATTAGA
GGTGTTTGCTCGTCGTGGTATTGGTCGCGGTGGTCATGCTGACATTGCAGAAATCGCTCAGGTTTCTGTTGCTACTGTTT
TTAACTACTTCCCAACCCGCGAAGACTTGGTTGATGATGTACTTAACTACGTAGTTCGTCAGTTCTCAAACTTCCTATCA
GATAATATCGATCTTGATATTCATGCAAAAGAAAACCTACGCAACCTAACTTCGGCAATGGTTGACCTTGTTGTCAACGA
CTGCCACTGGCTTAAAGTTTGGTTCGAGTGGAGTGCATCGACACGTGATGAAGTATGGCCACTGTTTGTTACGACAAACC
GTACCAACCAGCTTCTGGTTCAGAACATGTTTATCAAAGCAATCGAGCGCGGTGAAGTATGTGATGATCACGACCCAGCA
GACCTAGCGACACTATTCCACGGCATCTGCTACTCACTGTTTGTGCAGGCTAACCGTACTCAAGATGATGAGTCTGTAAA
CCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2CS00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

85

99.502

0.846
  hapR Vibrio cholerae C6706

76.382

99.005

0.756
  hapR Vibrio cholerae strain A1552

76.382

99.005

0.756

Multiple sequence alignment