Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GKO36_RS18610 Genome accession   NZ_CP046145
Coordinates   3730468..3731157 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain PEBA20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3725468..3736157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKO36_RS18575 (GKO36_18450) fliW 3725559..3725990 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  GKO36_RS18580 (GKO36_18455) - 3726020..3726589 (-) 570 WP_003151397.1 DUF6470 family protein -
  GKO36_RS18585 (GKO36_18460) flgL 3726680..3727597 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  GKO36_RS18590 (GKO36_18465) flgK 3727609..3729126 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  GKO36_RS18595 (GKO36_18470) - 3729142..3729624 (-) 483 WP_003151394.1 flagellar protein FlgN -
  GKO36_RS18600 (GKO36_18475) flgM 3729639..3729905 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  GKO36_RS18605 (GKO36_18480) - 3729975..3730394 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  GKO36_RS18610 (GKO36_18485) comFC 3730468..3731157 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  GKO36_RS18615 (GKO36_18490) - 3731163..3731447 (-) 285 WP_014419011.1 competence protein ComFB -
  GKO36_RS18620 (GKO36_18495) comFA 3731505..3732890 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  GKO36_RS18625 (GKO36_18500) - 3732998..3733846 (-) 849 WP_003151387.1 DegV family protein -
  GKO36_RS18630 (GKO36_18505) degU 3733944..3734633 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GKO36_RS18635 (GKO36_18510) degS 3734710..3735873 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=401656 GKO36_RS18610 WP_197535984.1 3730468..3731157(-) (comFC) [Bacillus velezensis strain PEBA20]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=401656 GKO36_RS18610 WP_197535984.1 3730468..3731157(-) (comFC) [Bacillus velezensis strain PEBA20]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment