Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   GKC13_RS07330 Genome accession   NZ_CP046134
Coordinates   1418389..1418832 (-) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1413389..1423832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS07315 (GKC13_07400) - 1414276..1414647 (-) 372 WP_041829277.1 hypothetical protein -
  GKC13_RS07320 (GKC13_07405) rcrQ 1414803..1416581 (-) 1779 WP_207559749.1 ABC transporter ATP-binding protein Regulator
  GKC13_RS07325 (GKC13_07410) rcrP 1416571..1418385 (-) 1815 WP_179971475.1 ABC transporter ATP-binding protein Regulator
  GKC13_RS07330 (GKC13_07415) rcrR 1418389..1418832 (-) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  GKC13_RS07335 (GKC13_07420) - 1419023..1419433 (-) 411 WP_011680804.1 peptide deformylase -
  GKC13_RS07340 (GKC13_07425) gdhA 1419692..1421044 (-) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  GKC13_RS07345 (GKC13_07430) - 1421388..1422494 (+) 1107 WP_014608024.1 AAA family ATPase -
  GKC13_RS07350 (GKC13_07435) - 1422558..1423312 (+) 755 Protein_1460 NUDIX hydrolase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=401529 GKC13_RS07330 WP_002945408.1 1418389..1418832(-) (rcrR) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=401529 GKC13_RS07330 WP_002945408.1 1418389..1418832(-) (rcrR) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment