Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GKC13_RS02080 Genome accession   NZ_CP046134
Coordinates   386731..387462 (+) Length   243 a.a.
NCBI ID   WP_002951673.1    Uniprot ID   A0AAP2RM94
Organism   Streptococcus thermophilus strain MAG_rmk202_sterm     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 381731..392462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC13_RS02055 (GKC13_02055) - 381863..383962 (+) 2100 WP_207560117.1 ATP-dependent Clp protease ATP-binding subunit -
  GKC13_RS10350 - 384371..384496 (+) 126 WP_011681534.1 hypothetical protein -
  GKC13_RS02060 (GKC13_02060) - 384515..385150 (+) 636 WP_179971026.1 DUF4230 domain-containing protein -
  GKC13_RS09865 - 385220..385390 (+) 171 WP_011226439.1 hypothetical protein -
  GKC13_RS02070 (GKC13_02070) - 385942..386250 (-) 309 WP_179971427.1 hypothetical protein -
  GKC13_RS02075 (GKC13_02075) - 386247..386666 (-) 420 WP_002951675.1 HIT family protein -
  GKC13_RS02080 (GKC13_02080) pptA 386731..387462 (+) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  GKC13_RS02085 (GKC13_02085) pptB 387459..388496 (+) 1038 WP_179971023.1 ABC transporter permease Regulator
  GKC13_RS02090 (GKC13_02090) - 388554..389345 (+) 792 WP_002951667.1 phosphotransferase family protein -
  GKC13_RS02095 (GKC13_02095) trmB 389355..389996 (+) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GKC13_RS02105 (GKC13_02105) - 390232..391413 (-) 1182 WP_207560118.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26830.05 Da        Isoelectric Point: 4.4606

>NTDB_id=401503 GKC13_RS02080 WP_002951673.1 386731..387462(+) (pptA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKSILMSTHVLDSAEKMCDRFVILHHGQILAQGTIDELRQTFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=401503 GKC13_RS02080 WP_002951673.1 386731..387462(+) (pptA) [Streptococcus thermophilus strain MAG_rmk202_sterm]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTCACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCCT
ATGGAGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTTTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGTATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTGGACTGGTTCCCGACTCAGTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTT
TTGGGATTGGATCCCTTGGCGATTTCTGATTTGATTGAGCTTCTGGCTGAGGAAAAAGCCAATGGCAAGTCTATTCTCAT
GTCGACTCACGTTTTGGATTCAGCTGAGAAGATGTGTGATCGCTTTGTGATTTTGCACCATGGACAGATCTTGGCACAGG
GGACGATTGATGAGCTTCGTCAGACCTTTGGTGACAGTAGTGCTAGTCTTAACGATATCTATATGCAGTTGACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

100

100

1
  pptA Streptococcus salivarius strain HSISS4

97.119

100

0.971

Multiple sequence alignment