Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GKC17_RS10685 Genome accession   NZ_CP046131
Coordinates   2158478..2159056 (-) Length   192 a.a.
NCBI ID   WP_003616385.1    Uniprot ID   A0A2I1SID3
Organism   Lactobacillus delbrueckii subsp. lactis strain MAG_rmk202_ldel     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2153478..2164056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC17_RS10665 (GKC17_10690) dnaB 2154181..2155551 (-) 1371 WP_016396059.1 replicative DNA helicase -
  GKC17_RS10670 (GKC17_10695) rplI 2155575..2156030 (-) 456 WP_013438865.1 50S ribosomal protein L9 -
  GKC17_RS10675 (GKC17_10700) - 2156053..2158074 (-) 2022 WP_207577470.1 DHH family phosphoesterase -
  GKC17_RS10680 (GKC17_10705) rpsR 2158215..2158451 (-) 237 WP_002879432.1 30S ribosomal protein S18 -
  GKC17_RS10685 (GKC17_10710) ssb 2158478..2159056 (-) 579 WP_003616385.1 single-stranded DNA-binding protein Machinery gene
  GKC17_RS10690 (GKC17_10715) rpsF 2159097..2159390 (-) 294 WP_003612647.1 30S ribosomal protein S6 -
  GKC17_RS10695 (GKC17_10720) gyrA 2159606..2162077 (-) 2472 WP_002879428.1 DNA gyrase subunit A -
  GKC17_RS10700 (GKC17_10725) gyrB 2162090..2164051 (-) 1962 WP_003616387.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20667.31 Da        Isoelectric Point: 4.5431

>NTDB_id=401487 GKC17_RS10685 WP_003616385.1 2158478..2159056(-) (ssb) [Lactobacillus delbrueckii subsp. lactis strain MAG_rmk202_ldel]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=401487 GKC17_RS10685 WP_003616385.1 2158478..2159056(-) (ssb) [Lactobacillus delbrueckii subsp. lactis strain MAG_rmk202_ldel]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1SID3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.031

100

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.396

100

0.474

Multiple sequence alignment