Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   SSAL_RS01545 Genome accession   NC_017594
Coordinates   298143..301796 (+) Length   1217 a.a.
NCBI ID   WP_014632634.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 293143..306796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS01535 (Ssal_00321) - 293212..294585 (+) 1374 WP_004183414.1 GHKL domain-containing protein -
  SSAL_RS01540 (Ssal_00322) rexB 294833..298153 (+) 3321 WP_045001441.1 ATP-dependent nuclease subunit B Machinery gene
  SSAL_RS01545 (Ssal_00325) rexA 298143..301796 (+) 3654 WP_014632634.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SSAL_RS01550 (Ssal_00327) - 302148..302879 (-) 732 WP_014632635.1 DUF554 domain-containing protein -
  SSAL_RS01555 (Ssal_00328) - 303154..303885 (+) 732 WP_002891761.1 ABC transporter ATP-binding protein -
  SSAL_RS01560 (Ssal_00329) - 303888..305477 (+) 1590 WP_014632636.1 ABC transporter permease -
  SSAL_RS01565 (Ssal_00330) proB 305597..306400 (+) 804 WP_014632637.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 138175.50 Da        Isoelectric Point: 4.7944

>NTDB_id=40146 SSAL_RS01545 WP_014632634.1 298143..301796(+) (rexA) [Streptococcus salivarius 57.I]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVESDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYTDLFNDYMQAKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTDAKPDKAKVELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREIDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKELHPENETEVLIYNSDEASVTPDEEGSDQPISSGE
ISLVIKEIISLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLVACTKKGLHPEVVTQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTTTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=40146 SSAL_RS01545 WP_014632634.1 298143..301796(+) (rexA) [Streptococcus salivarius 57.I]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAAGCCATTTACAGTAATGGTAGCAATATTCTTGTGTCAGCTTCGGCCGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTGAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAGTTGGGACAAGTTGAGTCGGATGAAGA
GCGTGCCTTTCTTTCAGACCAGATTGCCAAAATTGGGACGGCTGATATTGGAACCATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGGGTGTCACCTATTTTCCGCATCATGACAGACCCTGCTGAGCAGACGCTCATGAAA
AATGAGGTTTATACCGATCTTTTCAATGATTACATGCAAGCCAAGGATGCCCAACTTTTCCAAAAATTGGTCCGCAACTT
CGCTGGAAATGGTAAGACTAGTAAGGCCTTCCGCGATCTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAGAATCTCTTAAAAGGGCAGACGGATGCCAAGCCAGACAAGGCTAAAGTTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCATTCTTAAGAGACCATTTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTAGCCTTCTGGAGGGAGCCTTGGCCAATGACCAAACCGATATGGAGG
ACTTGCTCAAACAACTCTTGACTCTGTCAGGAGGGACTGGCTTGACAAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTGCTTGATTTTTCAGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCCTTTGAATTCTCAGATATTGCCCACTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCCAGCTACCGTGACCGTTACCATGAAGTAATGGTAGATGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGCCACAACCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCGGATCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAGGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
AGATATCCTCTATGACAAGACGCATATGTTGGTAGCAGGTAGCGAGAAGCAAAAAGAGCTCCATCCTGAAAATGAGACTG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGACGAGGAAGGTTCTGATCAACCTATCAGTAGTGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAGTCTTCATAAGCAAGGTGTACGTTTTGAGGACATTACCCTCCTAGCACCAAC
CCGCAACACCTATCTGGACTTGATGGCAAGCTTCGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCGCTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATTAATAATCCTCTTAATGACTATGCCCTCGTT
GCCCTCCTTCGTTCACCGATGTTTAATTTCAACGAGGATGATTTGGCTCGTATTGCTGTTCAGGCTGACAAGGGGCAATT
CTATGACAAGCTTCTTGTAGCTTGCACTAAAAAAGGGCTTCATCCGGAAGTTGTCACACAAGGACTTGATGCCAAGTTGA
CCCTTTTCACTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTACGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCTTT
GCGTGCCAATGCCTATGAAAAGACTGGTTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCTAAAAATGCCGTTAGCCTTATGACGATTCACAAGTCCAAGGGGCTA
GAATTCAAGTATGTTTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCACAGTAGGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGAAAAAGGACTTGGCATTAAGTACCTAGCTGACCTTAAAGACCAGATAAACACCAATTTGCCCAAGTTAA
ATGTTGTTCTAGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGTCGAGCAAGTATCTCAGAAGAGATGCGTTTG
CTCTATGTTGCAATGACTCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGTAGTAAGGAAAAATTAACCCAGCAATT
TGGCACGGATGTCGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCAGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCTCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCAGCGATTGACCTACCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAAGTGCAACCTCTT
GAGACTACCACTACCTTTGAGCTTCCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCGTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGATTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCATCCTA
GTGAACTTAAGGAACGTTACAAAGGGCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAGACTTGGAAGTCGTAGAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(478-894)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1059-1194)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(28-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.61

100

0.511

Multiple sequence alignment