Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   GKC27_RS05540 Genome accession   NZ_CP046130
Coordinates   1139262..1139459 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain DSM 27     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134262..1144459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS05510 (GKC27_05480) - 1134669..1134848 (+) 180 WP_003211282.1 YjzC family protein -
  GKC27_RS05515 (GKC27_05485) - 1135019..1136284 (+) 1266 WP_003212461.1 MFS transporter -
  GKC27_RS05520 (GKC27_05490) - 1136401..1136595 (-) 195 WP_003211779.1 YjzD family protein -
  GKC27_RS05525 (GKC27_05495) - 1136807..1137547 (+) 741 WP_003211061.1 hypothetical protein -
  GKC27_RS05530 (GKC27_05500) - 1137623..1138198 (+) 576 WP_003212131.1 hypothetical protein -
  GKC27_RS05535 (GKC27_05505) med 1138289..1139251 (+) 963 WP_003211430.1 BMP family ABC transporter substrate-binding protein Regulator
  GKC27_RS05540 (GKC27_05510) comZ 1139262..1139459 (+) 198 WP_003211983.1 ComZ family protein Regulator
  GKC27_RS05545 (GKC27_05515) - 1139470..1139703 (-) 234 WP_003211181.1 hypothetical protein -
  GKC27_RS05550 (GKC27_05520) - 1139873..1140811 (+) 939 WP_003212296.1 beta-ketoacyl-ACP synthase III -
  GKC27_RS05555 (GKC27_05525) fabF 1140833..1142074 (+) 1242 WP_003211631.1 beta-ketoacyl-ACP synthase II -
  GKC27_RS05560 (GKC27_05530) - 1142152..1142946 (+) 795 WP_003210981.1 DUF2268 domain-containing protein -
  GKC27_RS05565 (GKC27_05535) - 1143117..1144097 (+) 981 WP_034620002.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=401428 GKC27_RS05540 WP_003211983.1 1139262..1139459(+) (comZ) [Bacillus pumilus strain DSM 27]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=401428 GKC27_RS05540 WP_003211983.1 1139262..1139459(+) (comZ) [Bacillus pumilus strain DSM 27]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTTATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment