Detailed information
Bioinformatically predicted
Overview
| Name | med | Type | Regulator |
| Locus tag | GKC27_RS05535 | Genome accession | NZ_CP046130 |
| Coordinates | 1138289..1139251 (+) | Length | 320 a.a. |
| NCBI ID | WP_003211430.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain DSM 27 | ||
| Function | regulation of regulators (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1133289..1144251
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC27_RS05505 (GKC27_05475) | argF | 1133616..1134566 (+) | 951 | WP_003211887.1 | ornithine carbamoyltransferase | - |
| GKC27_RS05510 (GKC27_05480) | - | 1134669..1134848 (+) | 180 | WP_003211282.1 | YjzC family protein | - |
| GKC27_RS05515 (GKC27_05485) | - | 1135019..1136284 (+) | 1266 | WP_003212461.1 | MFS transporter | - |
| GKC27_RS05520 (GKC27_05490) | - | 1136401..1136595 (-) | 195 | WP_003211779.1 | YjzD family protein | - |
| GKC27_RS05525 (GKC27_05495) | - | 1136807..1137547 (+) | 741 | WP_003211061.1 | hypothetical protein | - |
| GKC27_RS05530 (GKC27_05500) | - | 1137623..1138198 (+) | 576 | WP_003212131.1 | hypothetical protein | - |
| GKC27_RS05535 (GKC27_05505) | med | 1138289..1139251 (+) | 963 | WP_003211430.1 | BMP family ABC transporter substrate-binding protein | Regulator |
| GKC27_RS05540 (GKC27_05510) | comZ | 1139262..1139459 (+) | 198 | WP_003211983.1 | ComZ family protein | Regulator |
| GKC27_RS05545 (GKC27_05515) | - | 1139470..1139703 (-) | 234 | WP_003211181.1 | hypothetical protein | - |
| GKC27_RS05550 (GKC27_05520) | - | 1139873..1140811 (+) | 939 | WP_003212296.1 | beta-ketoacyl-ACP synthase III | - |
| GKC27_RS05555 (GKC27_05525) | fabF | 1140833..1142074 (+) | 1242 | WP_003211631.1 | beta-ketoacyl-ACP synthase II | - |
| GKC27_RS05560 (GKC27_05530) | - | 1142152..1142946 (+) | 795 | WP_003210981.1 | DUF2268 domain-containing protein | - |
| GKC27_RS05565 (GKC27_05535) | - | 1143117..1144097 (+) | 981 | WP_034620002.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 320 a.a. Molecular weight: 35608.51 Da Isoelectric Point: 5.4531
>NTDB_id=401427 GKC27_RS05535 WP_003211430.1 1138289..1139251(+) (med) [Bacillus pumilus strain DSM 27]
MKYQRLVMIFSFLLLLSACSQAPLKGQIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAIE
EFHKKGVNLIIGHGSEYSEIFNIISEDYPKTQFITVNGNKPQADNVANVTFKGEAMGFFGGMTAAHMSKSKKIGILATYD
WQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVELYQKLKKQGVDVVYPAGDGYNIPVIEQIKADNLSAIGYVTDQS
NLGSHTVLTSTVQHVDKAYSIIAKKFNEGKLNAQGEYSFDFKEGVIEMGKFSSTIDRAFLKDIESDIASYKKTGKLPNEK
MKYQRLVMIFSFLLLLSACSQAPLKGQIEKVGLLVPDTINDQVWGTKGYKGLLNIQSTFGVDVYYKEGMVDKEKIVDAIE
EFHKKGVNLIIGHGSEYSEIFNIISEDYPKTQFITVNGNKPQADNVANVTFKGEAMGFFGGMTAAHMSKSKKIGILATYD
WQSEVDGFIKGAKYQDEHVQVLAEFVENWDDADKAVELYQKLKKQGVDVVYPAGDGYNIPVIEQIKADNLSAIGYVTDQS
NLGSHTVLTSTVQHVDKAYSIIAKKFNEGKLNAQGEYSFDFKEGVIEMGKFSSTIDRAFLKDIESDIASYKKTGKLPNEK
Nucleotide
Download Length: 963 bp
>NTDB_id=401427 GKC27_RS05535 WP_003211430.1 1138289..1139251(+) (med) [Bacillus pumilus strain DSM 27]
ATGAAGTATCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTCCTATTATCTGCCTGCTCACAGGCACCTTTAAAAGGACA
GATTGAGAAGGTGGGTTTACTCGTCCCCGATACAATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTATTAA
ATATTCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGAATGGTCGACAAAGAGAAAATCGTTGATGCCATTGAA
GAATTTCACAAAAAAGGAGTCAATTTGATTATTGGCCATGGCAGTGAATACAGCGAAATTTTCAACATCATTAGTGAAGA
TTATCCGAAAACACAATTTATCACGGTAAATGGAAACAAGCCTCAGGCGGATAATGTTGCGAATGTGACGTTTAAAGGTG
AAGCGATGGGCTTTTTTGGAGGCATGACAGCAGCACATATGTCAAAATCAAAAAAGATTGGTATTCTTGCTACATATGAT
TGGCAAAGCGAAGTAGACGGCTTTATTAAAGGTGCAAAATATCAAGATGAACATGTACAAGTGCTTGCCGAGTTTGTTGA
AAACTGGGATGATGCGGACAAAGCCGTGGAGCTCTATCAAAAATTGAAAAAACAGGGCGTAGATGTTGTATATCCAGCAG
GTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAGCCGATAATTTATCAGCGATCGGATATGTCACCGATCAATCC
AACCTCGGCAGCCATACCGTCTTAACAAGCACAGTCCAGCATGTGGATAAAGCGTATAGTATTATTGCGAAGAAATTTAA
TGAAGGCAAGCTAAATGCACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGTTCCA
CCATTGACCGTGCTTTTTTGAAAGACATTGAAAGTGATATTGCGTCTTACAAAAAAACTGGCAAACTGCCAAATGAAAAG
TGA
ATGAAGTATCAGCGGCTTGTCATGATCTTTTCGTTCCTTCTCCTATTATCTGCCTGCTCACAGGCACCTTTAAAAGGACA
GATTGAGAAGGTGGGTTTACTCGTCCCCGATACAATTAATGATCAAGTTTGGGGAACGAAAGGTTATAAAGGCTTATTAA
ATATTCAATCAACATTTGGTGTAGATGTTTATTATAAGGAAGGAATGGTCGACAAAGAGAAAATCGTTGATGCCATTGAA
GAATTTCACAAAAAAGGAGTCAATTTGATTATTGGCCATGGCAGTGAATACAGCGAAATTTTCAACATCATTAGTGAAGA
TTATCCGAAAACACAATTTATCACGGTAAATGGAAACAAGCCTCAGGCGGATAATGTTGCGAATGTGACGTTTAAAGGTG
AAGCGATGGGCTTTTTTGGAGGCATGACAGCAGCACATATGTCAAAATCAAAAAAGATTGGTATTCTTGCTACATATGAT
TGGCAAAGCGAAGTAGACGGCTTTATTAAAGGTGCAAAATATCAAGATGAACATGTACAAGTGCTTGCCGAGTTTGTTGA
AAACTGGGATGATGCGGACAAAGCCGTGGAGCTCTATCAAAAATTGAAAAAACAGGGCGTAGATGTTGTATATCCAGCAG
GTGATGGTTATAATATCCCTGTCATTGAACAAATCAAAGCCGATAATTTATCAGCGATCGGATATGTCACCGATCAATCC
AACCTCGGCAGCCATACCGTCTTAACAAGCACAGTCCAGCATGTGGATAAAGCGTATAGTATTATTGCGAAGAAATTTAA
TGAAGGCAAGCTAAATGCACAAGGTGAGTACTCCTTTGACTTTAAAGAAGGAGTGATCGAAATGGGGAAATTTAGTTCCA
CCATTGACCGTGCTTTTTTGAAAGACATTGAAAGTGATATTGCGTCTTACAAAAAAACTGGCAAACTGCCAAATGAAAAG
TGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| med | Bacillus subtilis subsp. subtilis str. 168 |
63.578 |
97.813 |
0.622 |