Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GKC25_RS10775 | Genome accession | NZ_CP046128 |
| Coordinates | 2143259..2143594 (+) | Length | 111 a.a. |
| NCBI ID | WP_095285385.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain V17C11 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2138259..2148594
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GKC25_RS10755 (GKC25_10665) | gcvT | 2138737..2139834 (-) | 1098 | WP_034661277.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| GKC25_RS10760 (GKC25_10670) | - | 2140396..2142066 (+) | 1671 | WP_187703963.1 | SNF2-related protein | - |
| GKC25_RS10765 (GKC25_10675) | - | 2142081..2142878 (+) | 798 | WP_034661279.1 | YqhG family protein | - |
| GKC25_RS10770 (GKC25_10680) | - | 2143061..2143225 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| GKC25_RS10775 (GKC25_10685) | sinR | 2143259..2143594 (+) | 336 | WP_095285385.1 | helix-turn-helix domain-containing protein | Regulator |
| GKC25_RS10780 (GKC25_10690) | - | 2143662..2144462 (-) | 801 | WP_034661283.1 | TasA family protein | - |
| GKC25_RS10785 (GKC25_10695) | - | 2144520..2145092 (-) | 573 | WP_034662000.1 | signal peptidase I | - |
| GKC25_RS10790 (GKC25_10700) | tapA | 2145144..2145671 (-) | 528 | WP_034661284.1 | amyloid fiber anchoring/assembly protein TapA | - |
| GKC25_RS10795 (GKC25_10705) | - | 2145971..2146249 (+) | 279 | WP_223249903.1 | DUF3889 domain-containing protein | - |
| GKC25_RS10800 (GKC25_10710) | - | 2146283..2146477 (-) | 195 | WP_024718846.1 | YqzE family protein | - |
| GKC25_RS10805 (GKC25_10715) | comGG | 2146536..2146919 (-) | 384 | WP_095285386.1 | competence type IV pilus minor pilin ComGG | - |
| GKC25_RS10810 (GKC25_10720) | comGF | 2146916..2147416 (-) | 501 | WP_095285387.1 | competence type IV pilus minor pilin ComGF | - |
| GKC25_RS10815 (GKC25_10725) | comGE | 2147355..2147672 (-) | 318 | WP_034661291.1 | competence type IV pilus minor pilin ComGE | - |
| GKC25_RS10820 (GKC25_10730) | comGD | 2147656..2148102 (-) | 447 | WP_095285388.1 | competence type IV pilus minor pilin ComGD | - |
| GKC25_RS10825 (GKC25_10735) | comGC | 2148095..2148388 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12959.51 Da Isoelectric Point: 4.9956
>NTDB_id=401387 GKC25_RS10775 WP_095285385.1 2143259..2143594(+) (sinR) [Bacillus pumilus strain V17C11]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=401387 GKC25_RS10775 WP_095285385.1 2143259..2143594(+) (sinR) [Bacillus pumilus strain V17C11]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |