Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GKC25_RS10590 Genome accession   NZ_CP046128
Coordinates   2110678..2112411 (-) Length   577 a.a.
NCBI ID   WP_106037972.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2105678..2117411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS10575 (GKC25_10485) - 2106568..2107668 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  GKC25_RS10580 (GKC25_10490) spo0A 2108113..2108916 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  GKC25_RS10585 (GKC25_10495) spoIVB 2109202..2110479 (-) 1278 WP_034661244.1 SpoIVB peptidase -
  GKC25_RS10590 (GKC25_10500) recN 2110678..2112411 (-) 1734 WP_106037972.1 DNA repair protein RecN Machinery gene
  GKC25_RS10595 (GKC25_10505) argR 2112445..2112894 (-) 450 WP_034661246.1 transcriptional regulator ArgR -
  GKC25_RS10600 (GKC25_10510) - 2113057..2113911 (-) 855 WP_034661248.1 TlyA family RNA methyltransferase -
  GKC25_RS10605 (GKC25_10515) dxs 2113908..2115809 (-) 1902 WP_187703961.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GKC25_RS10610 (GKC25_10520) - 2115960..2116850 (-) 891 WP_106037973.1 polyprenyl synthetase family protein -
  GKC25_RS10615 (GKC25_10525) - 2116840..2117100 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64683.42 Da        Isoelectric Point: 4.7442

>NTDB_id=401386 GKC25_RS10590 WP_106037972.1 2110678..2112411(-) (recN) [Bacillus pumilus strain V17C11]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWATKLAKQIQTELKDLYMEKSSFDTAFSI
RYAPFGSTDYPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=401386 GKC25_RS10590 WP_106037972.1 2110678..2112411(-) (recN) [Bacillus pumilus strain V17C11]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCTGGAAAATCCATCATGATTGACGCAGTCTCACTTCTTGTAGGAGGGAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAAAAAAAGGCAGAGCTGGAGGGGCTTTTTCTAGTGCCAGCCGATCACCCTGTATTTGCTTTGTGC
GAAGAGCAGGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGAAAAAGCATCTGCCG
CATCAATGGCAAACTTGTCACGATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGGCAGCACGATA
ACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTGTCA
CAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAGATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCATATAATGCCTTGCGCAATGAG
CAGGGAGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAAGCT
ATCCGAACAAGTGTCGAACTCCTATTACTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGTTGGATCAATTAGAGT
TCGACCCAGCACGTCTTGATTTTATTGAATCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATATGGGACAACGGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATAGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTGCAGACGCT
TAAAAACAAACTGGATGCAATGAGCCGTGATGCCCTGCTGGAAGCTCTCAACGTTTCGGAGCTTCGTAAAAAATGGGCCA
CAAAGCTAGCGAAGCAAATTCAAACGGAACTAAAGGATTTGTATATGGAGAAGTCATCGTTTGACACAGCTTTTTCCATT
CGGTATGCGCCTTTTGGCAGTACGGACTATCCGCTGCTAGATGGAAAGCCCGTCCAGCTCGGAAAAAACGGAATCGACCA
AGCACAATTTGTTATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCAAAAGTAGCCTCGGGTGGAGAAATTTCAC
GTGTCATGCTCGCCGTGAAAAGTATTTTCTCAGCCAAACAAGAAGTCACGTCCATTATTTTCGATGAGGTGGATACGGGC
GTAAGCGGCAGAGTGGCACAGGCGATTGCCGAAAAAATTTACAAAGTGGCAGCTGGCTCACAAGTGCTCTGCATTACGCA
TCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCTAAAGCTGGCAGAACACTGACGAGCG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACAAAA
CAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.217

100

0.752

Multiple sequence alignment