Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   GKC25_RS05315 Genome accession   NZ_CP046128
Coordinates   1100621..1100818 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain V17C11     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095621..1105818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC25_RS05285 (GKC25_05265) - 1096028..1096207 (+) 180 WP_034663316.1 YjzC family protein -
  GKC25_RS05290 (GKC25_05270) - 1096376..1097641 (+) 1266 WP_034663308.1 MFS transporter -
  GKC25_RS05295 (GKC25_05275) - 1097760..1097954 (-) 195 WP_003211779.1 YjzD family protein -
  GKC25_RS05300 (GKC25_05280) - 1098166..1098906 (+) 741 WP_034663305.1 hypothetical protein -
  GKC25_RS05305 (GKC25_05285) - 1098982..1099557 (+) 576 WP_034663302.1 hypothetical protein -
  GKC25_RS05310 (GKC25_05290) med 1099648..1100610 (+) 963 WP_034663299.1 BMP family ABC transporter substrate-binding protein Regulator
  GKC25_RS05315 (GKC25_05295) comZ 1100621..1100818 (+) 198 WP_003211983.1 ComZ family protein Regulator
  GKC25_RS05320 (GKC25_05300) - 1100828..1101061 (-) 234 WP_034663296.1 hypothetical protein -
  GKC25_RS05325 (GKC25_05305) - 1101231..1102169 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  GKC25_RS05330 (GKC25_05310) fabF 1102191..1103432 (+) 1242 WP_034663293.1 beta-ketoacyl-ACP synthase II -
  GKC25_RS05335 (GKC25_05315) - 1103510..1104304 (+) 795 WP_034663290.1 DUF2268 domain-containing protein -
  GKC25_RS05340 (GKC25_05320) - 1104473..1105453 (+) 981 WP_045210037.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=401368 GKC25_RS05315 WP_003211983.1 1100621..1100818(+) (comZ) [Bacillus pumilus strain V17C11]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=401368 GKC25_RS05315 WP_003211983.1 1100621..1100818(+) (comZ) [Bacillus pumilus strain V17C11]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
GGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTGG
GGAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677

Multiple sequence alignment