Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SSAL_RS00075 Genome accession   NC_017594
Coordinates   14521..15621 (-) Length   366 a.a.
NCBI ID   WP_013991340.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 9521..20621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS00060 (Ssal_00008) - 10356..11228 (-) 873 WP_014632477.1 YitT family protein -
  SSAL_RS00065 (Ssal_00009) trpS 11657..12679 (+) 1023 WP_014632478.1 tryptophan--tRNA ligase -
  SSAL_RS00070 (Ssal_00010) guaB 12858..14339 (+) 1482 WP_013991341.1 IMP dehydrogenase -
  SSAL_RS00075 (Ssal_00011) recF 14521..15621 (-) 1101 WP_013991340.1 DNA replication/repair protein RecF Machinery gene
  SSAL_RS00080 (Ssal_00012) yaaA 15624..16001 (-) 378 WP_013991339.1 S4 domain-containing protein YaaA -
  SSAL_RS00085 (Ssal_00013) - 16079..17329 (+) 1251 WP_013991338.1 pitrilysin family protein -
  SSAL_RS00090 (Ssal_00014) - 17331..18608 (+) 1278 WP_014632479.1 pitrilysin family protein -
  SSAL_RS00095 (Ssal_00015) - 18667..19524 (+) 858 WP_013991336.1 helix-turn-helix domain-containing protein -
  SSAL_RS00100 (Ssal_00016) pgsA 19537..20079 (+) 543 WP_002885640.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42233.26 Da        Isoelectric Point: 7.7930

>NTDB_id=40122 SSAL_RS00075 WP_013991340.1 14521..15621(-) (recF) [Streptococcus salivarius 57.I]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGDIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=40122 SSAL_RS00075 WP_013991340.1 14521..15621(-) (recF) [Streptococcus salivarius 57.I]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTGCTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCTTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAAC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCGCATAGGGATGATTTAACATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAGGGGCAGCAACGTAGTCTCATACTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAATCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTTAAGAATGGTGATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-343)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.084

97.814

0.637
  recF Bacillus subtilis subsp. subtilis str. 168

44.142

100

0.443

Multiple sequence alignment