Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | GJV39_RS02315 | Genome accession | NZ_CP046114 |
| Coordinates | 459045..459386 (+) | Length | 113 a.a. |
| NCBI ID | WP_010786294.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SCW0912 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 454045..464386
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV39_RS02295 (GJV39_02295) | - | 455320..455907 (-) | 588 | WP_005714008.1 | FMN-dependent NADH-azoreductase | - |
| GJV39_RS02300 (GJV39_02300) | waaF | 456003..457055 (-) | 1053 | WP_005714010.1 | lipopolysaccharide heptosyltransferase II | - |
| GJV39_RS02305 (GJV39_02305) | - | 457064..457420 (-) | 357 | WP_021114784.1 | MliC family protein | - |
| GJV39_RS02310 (GJV39_02310) | - | 457522..458787 (-) | 1266 | WP_005714013.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| GJV39_RS02315 (GJV39_02315) | comEA/comE1 | 459045..459386 (+) | 342 | WP_010786294.1 | ComEA family DNA-binding protein | Machinery gene |
| GJV39_RS02320 (GJV39_02320) | - | 459486..459934 (-) | 449 | Protein_435 | IS5 family transposase | - |
| GJV39_RS02325 (GJV39_02325) | epmA | 460075..461055 (+) | 981 | WP_035498022.1 | elongation factor P--(R)-beta-lysine ligase | - |
| GJV39_RS02330 (GJV39_02330) | - | 461108..461386 (+) | 279 | WP_005714674.1 | DUF1778 domain-containing protein | - |
| GJV39_RS02335 (GJV39_02335) | - | 461387..461884 (+) | 498 | WP_021109941.1 | GNAT family N-acetyltransferase | - |
| GJV39_RS02340 (GJV39_02340) | - | 461898..462680 (+) | 783 | WP_010786292.1 | TatD family hydrolase | - |
| GJV39_RS02345 (GJV39_02345) | - | 462718..463245 (+) | 528 | WP_005714677.1 | DUF1523 family protein | - |
| GJV39_RS02350 (GJV39_02350) | lpxH | 463359..464087 (+) | 729 | WP_005712084.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12407.27 Da Isoelectric Point: 9.8972
>NTDB_id=401132 GJV39_RS02315 WP_010786294.1 459045..459386(+) (comEA/comE1) [Glaesserella parasuis strain SCW0912]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE
Nucleotide
Download Length: 342 bp
>NTDB_id=401132 GJV39_RS02315 WP_010786294.1 459045..459386(+) (comEA/comE1) [Glaesserella parasuis strain SCW0912]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
98.23 |
100 |
0.982 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.13 |
100 |
0.602 |