Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GKQ54_RS00040 Genome accession   NZ_CP046113
Coordinates   9639..10205 (+) Length   188 a.a.
NCBI ID   WP_002379277.1    Uniprot ID   A0A855U6F7
Organism   Enterococcus faecalis strain 092160007-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4639..15205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKQ54_RS00030 (GKQ54_00030) gyrA 6616..9117 (+) 2502 WP_002361457.1 DNA gyrase subunit A -
  GKQ54_RS00035 (GKQ54_00035) rpsF 9292..9594 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  GKQ54_RS00040 (GKQ54_00040) ssb 9639..10205 (+) 567 WP_002379277.1 single-stranded DNA-binding protein Machinery gene
  GKQ54_RS00045 (GKQ54_00045) rpsR 10231..10470 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  GKQ54_RS00050 (GKQ54_00050) - 10627..12651 (+) 2025 WP_002363542.1 DHH family phosphoesterase -
  GKQ54_RS00055 (GKQ54_00055) rplI 12657..13109 (+) 453 WP_002356023.1 50S ribosomal protein L9 -
  GKQ54_RS00060 (GKQ54_00060) dnaB 13383..14750 (+) 1368 WP_002381331.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20604.20 Da        Isoelectric Point: 4.6010

>NTDB_id=401094 GKQ54_RS00040 WP_002379277.1 9639..10205(+) (ssb) [Enterococcus faecalis strain 092160007-3]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNASSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=401094 GKQ54_RS00040 WP_002379277.1 9639..10205(+) (ssb) [Enterococcus faecalis strain 092160007-3]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCAGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855U6F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.927

100

0.548

Multiple sequence alignment