Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   GGC04_RS11605 Genome accession   NZ_CP046065
Coordinates   2537937..2539331 (-) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio sp. THAF191d     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2532937..2544331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GGC04_RS11570 (GGC04_11690) moaE 2533630..2534085 (-) 456 WP_006963011.1 molybdopterin synthase catalytic subunit MoaE -
  GGC04_RS11575 (GGC04_11695) moaD 2534085..2534330 (-) 246 WP_006963012.1 molybdopterin synthase sulfur carrier subunit -
  GGC04_RS11580 (GGC04_11700) moaC 2534327..2534806 (-) 480 WP_006963013.1 cyclic pyranopterin monophosphate synthase MoaC -
  GGC04_RS11585 (GGC04_11705) moaB 2534819..2535331 (-) 513 WP_006963014.1 molybdenum cofactor biosynthesis protein B -
  GGC04_RS11590 (GGC04_11710) moaA 2535421..2536410 (-) 990 WP_006963015.1 GTP 3',8-cyclase MoaA -
  GGC04_RS11595 (GGC04_11715) - 2536716..2537603 (+) 888 WP_006963016.1 YvcK family protein -
  GGC04_RS11600 (GGC04_11720) luxU 2537589..2537933 (-) 345 WP_029236080.1 quorum-sensing phosphorelay protein LuxU -
  GGC04_RS11605 (GGC04_11725) luxO 2537937..2539331 (-) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  GGC04_RS11610 (GGC04_11735) uvrB 2539595..2541625 (-) 2031 WP_006963019.1 excinuclease ABC subunit UvrB -
  GGC04_RS11620 (GGC04_11745) - 2542650..2543243 (+) 594 WP_006963020.1 outer membrane beta-barrel protein -
  GGC04_RS11625 - 2543321..2543761 (-) 441 WP_129542192.1 polymer-forming cytoskeletal protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=400856 GGC04_RS11605 WP_019275536.1 2537937..2539331(-) (luxO) [Vibrio sp. THAF191d]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=400856 GGC04_RS11605 WP_019275536.1 2537937..2539331(-) (luxO) [Vibrio sp. THAF191d]
ATGCAACACAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGATACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTTTGGGTATCGATATCAACATCGTTGGTACCGGGCGTGATGCCATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATATTCATGACTGCCCACGGCTCGATTGATACCGCTGTAGAAGCGATGCGCCATGGTGCTCAGGA
TTTCCTTATCAAGCCGTGTGAAGCGGACCGACTCCGTGTCACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCTGATAATCCGGGTAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCACACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCGGCTATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCATGTGAAAGGCGCGTTTACCGGCGCTGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAACTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGTTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGCTCTTCGAAAATGAAAAGCGTCGACGTGCGTTTCGTCTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGGCT
GGCACCAGAAGTTGTGAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTTCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCAGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCCATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGCTATTTAGATGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment