Detailed information NTG0400732

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GJQ55_RS02490
• Genome accession: NZ_CP046056
• Coordinates: 485028..486347 (-)
• Length: 439 a.a.
• NCBI ID: WP_228345938.1
• Uniprot ID: A0A9X7YN66
• Organism: Venatoribacter cucullus strain ASxL5
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 480028..491347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJQ55_RS02475 (GJQ55_02455)	-	480457..483594 (-)	3138	WP_228345935.1	PilC/PilY family type IV pilus protein	-
GJQ55_RS02480 (GJQ55_02460)	-	483641..484201 (-)	561	WP_228345936.1	pilus assembly PilX family protein	-
GJQ55_RS02485 (GJQ55_02465)	-	484343..484891 (-)	549	WP_228345937.1	GspH/FimT family pseudopilin	-
GJQ55_RS02490 (GJQ55_02470)	pilR	485028..486347 (-)	1320	WP_228345938.1	sigma-54-dependent transcriptional regulator	Regulator
GJQ55_RS02495 (GJQ55_02475)	-	486344..487897 (-)	1554	WP_228345939.1	sensor histidine kinase	-
GJQ55_RS02500 (GJQ55_02480)	-	487992..489614 (+)	1623	WP_228345940.1	NAD+ synthase	-
GJQ55_RS02505 (GJQ55_02485)	-	489733..490554 (-)	822	WP_228345941.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 439 a.a.
• Molecular weight: 49017.15 Da
• Isoelectric Point: 5.6436

>NTDB_id=400732 GJQ55_RS02490 WP_228345938.1 485028..486347(-) (pilR) [Venatoribacter cucullus strain ASxL5]
MTRFRALIIDDEADIRTLVAMTLNRMELECFQAGSVAEARQQLQQRSYHFCITDMKLPDGNGLDLIQLCQQKFPDMPVAM
ITAYGNMELGVSAMKAGAFDVVAKPIDTERLRQLARQALQLSKVPVHLETLPSAIGLIGDSAPMQSLKEQIFKVARTQAP
VFIFGEDGSGKELTARLIHHQSSRAQRPLVSLSCREHSPAELEQALFGEHNPADGLLYAADGGTLLLTDIDQLPPECQGR
LLRVLQDKTLSDPRQEQHLAADFRLLSASDKDLSQLVQQGQFRQDLLFRLNVITLNVPALREHSQDIPLLANHFMRLYCR
QWSMPELTLQADALDALQHYAFPGNVSELENLLQRVVTLAEGDSISAADLQLQTGPQELMPAVQGRIDTSNLEDYLENIE
RRAITQALTATRWNKTAAAEKLGISFRALRYRCKKLGID

Nucleotide

• Length: 1320 bp

>NTDB_id=400732 GJQ55_RS02490 WP_228345938.1 485028..486347(-) (pilR) [Venatoribacter cucullus strain ASxL5]
ATGACCCGATTCAGAGCGTTGATTATTGACGATGAAGCCGACATCCGCACCCTGGTGGCCATGACCCTGAACCGCATGGA
GCTGGAATGTTTTCAGGCCGGCTCGGTCGCCGAAGCGCGTCAGCAACTGCAGCAACGCAGTTACCATTTCTGCATTACCG
ATATGAAACTGCCGGATGGTAACGGGCTGGATTTAATTCAGCTGTGTCAGCAGAAATTTCCCGACATGCCGGTGGCCATG
ATTACCGCTTACGGCAATATGGAACTGGGCGTCAGCGCCATGAAAGCCGGCGCCTTCGATGTGGTGGCCAAACCCATTGA
TACCGAACGGCTGCGCCAGCTGGCCCGCCAGGCACTGCAACTGAGCAAAGTACCGGTGCACCTGGAAACCCTGCCGTCGG
CTATTGGGCTGATTGGTGATTCCGCACCGATGCAAAGCCTGAAAGAACAGATTTTTAAAGTTGCCCGCACCCAGGCACCC
GTGTTTATTTTCGGCGAAGATGGCAGCGGCAAAGAGCTGACCGCGCGCCTGATTCACCACCAGAGCAGCCGTGCACAGCG
GCCGCTGGTATCACTGTCCTGCCGGGAACATTCACCAGCCGAGCTGGAACAGGCCTTGTTTGGTGAACATAACCCCGCCG
ATGGCCTGCTGTATGCGGCCGATGGCGGTACGCTGCTGTTAACCGACATTGACCAGCTGCCCCCCGAATGCCAGGGCCGT
CTGCTGCGTGTGCTGCAGGATAAAACCCTTAGTGATCCGCGGCAGGAGCAACACCTGGCTGCCGACTTCCGCCTGCTCAG
CGCCAGCGACAAAGACCTGAGCCAGCTGGTACAACAAGGGCAGTTCCGCCAGGACCTGCTGTTCCGCCTGAATGTCATTA
CCCTGAACGTCCCGGCGCTGCGCGAACACTCGCAGGATATCCCGCTGCTGGCCAACCATTTTATGCGCCTGTATTGCCGC
CAGTGGAGTATGCCGGAACTGACCCTGCAGGCCGACGCGCTGGATGCACTGCAACACTATGCTTTTCCCGGCAATGTCAG
CGAGCTGGAAAACCTGCTGCAACGGGTGGTGACACTGGCCGAGGGCGACAGCATCAGCGCCGCTGATCTGCAATTACAAA
CCGGCCCACAAGAGCTGATGCCAGCGGTTCAGGGCCGCATCGACACCAGCAACCTGGAAGATTACCTGGAAAACATTGAA
CGCCGCGCCATTACCCAGGCCTTAACGGCCACCCGCTGGAATAAAACCGCCGCCGCCGAAAAACTGGGCATCAGTTTCCG
CGCCCTGCGTTATCGCTGTAAAAAGCTGGGGATTGACTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-295)

• Bacterial regulatory protein, Fis family (HTH_8) (396-436)

• Response regulator receiver domain (Response_reg) (7-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	48.661	100	0.497
pilR	Acinetobacter baumannii strain A118	41.215	100	0.433