Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | GJQ69_RS05385 | Genome accession | NZ_CP046051 |
| Coordinates | 1112771..1114162 (-) | Length | 463 a.a. |
| NCBI ID | WP_086035708.1 | Uniprot ID | A0A859DUK5 |
| Organism | Caproicibacterium lactatifermentans strain LBM19010 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1078045..1112814 | 1112771..1114162 | flank | -43 |
Gene organization within MGE regions
Location: 1078045..1114162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJQ69_RS05210 (GJQ69_05200) | hisE | 1078045..1078371 (+) | 327 | WP_086035742.1 | phosphoribosyl-ATP diphosphatase | - |
| GJQ69_RS05215 (GJQ69_05205) | - | 1078435..1079901 (-) | 1467 | WP_086035741.1 | J domain-containing protein | - |
| GJQ69_RS05220 (GJQ69_05210) | - | 1079911..1080873 (-) | 963 | WP_086035740.1 | RluA family pseudouridine synthase | - |
| GJQ69_RS05225 (GJQ69_05215) | - | 1081049..1081813 (+) | 765 | WP_174193174.1 | JAB domain-containing protein | - |
| GJQ69_RS05230 (GJQ69_05220) | uvrB | 1081810..1083777 (+) | 1968 | WP_086035738.1 | excinuclease ABC subunit UvrB | - |
| GJQ69_RS05235 (GJQ69_05225) | uvrA | 1083779..1086616 (+) | 2838 | WP_086035737.1 | excinuclease ABC subunit UvrA | - |
| GJQ69_RS05240 (GJQ69_05230) | sdaAA | 1086641..1087522 (-) | 882 | WP_086035736.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| GJQ69_RS05245 (GJQ69_05235) | sdaAB | 1087534..1088196 (-) | 663 | WP_086035735.1 | L-serine ammonia-lyase, iron-sulfur-dependent subunit beta | - |
| GJQ69_RS05250 (GJQ69_05240) | - | 1088375..1088920 (-) | 546 | WP_086035734.1 | ECF transporter S component | - |
| GJQ69_RS05255 (GJQ69_05245) | - | 1089150..1089839 (-) | 690 | WP_086035733.1 | radical SAM protein | - |
| GJQ69_RS05260 (GJQ69_05250) | - | 1089826..1090407 (-) | 582 | WP_086035732.1 | ECF transporter S component | - |
| GJQ69_RS05265 (GJQ69_05255) | - | 1090941..1092470 (-) | 1530 | WP_174193176.1 | YifB family Mg chelatase-like AAA ATPase | - |
| GJQ69_RS05270 (GJQ69_05260) | - | 1092678..1093277 (+) | 600 | WP_086035730.1 | sigma-70 family RNA polymerase sigma factor | - |
| GJQ69_RS05275 (GJQ69_05265) | - | 1093316..1093591 (+) | 276 | WP_086035729.1 | zinc-ribbon domain containing protein | - |
| GJQ69_RS05280 (GJQ69_05270) | - | 1093661..1093900 (+) | 240 | WP_086035728.1 | DUF1858 domain-containing protein | - |
| GJQ69_RS05285 (GJQ69_05275) | - | 1093964..1094653 (+) | 690 | WP_086035727.1 | class I SAM-dependent methyltransferase | - |
| GJQ69_RS05290 (GJQ69_05280) | - | 1094675..1095445 (+) | 771 | WP_174193186.1 | Nif3-like dinuclear metal center hexameric protein | - |
| GJQ69_RS05295 (GJQ69_05285) | - | 1095480..1097240 (+) | 1761 | WP_086035725.1 | Rqc2 family fibronectin-binding protein | - |
| GJQ69_RS05300 (GJQ69_05290) | - | 1097260..1098468 (+) | 1209 | WP_086035724.1 | hypothetical protein | - |
| GJQ69_RS05305 (GJQ69_05295) | - | 1098499..1098909 (+) | 411 | WP_086035723.1 | hypothetical protein | - |
| GJQ69_RS05310 (GJQ69_05300) | - | 1098984..1099442 (-) | 459 | WP_174193188.1 | ACT domain-containing protein | - |
| GJQ69_RS05315 (GJQ69_05305) | dapB | 1099458..1100210 (-) | 753 | WP_174193190.1 | 4-hydroxy-tetrahydrodipicolinate reductase | - |
| GJQ69_RS05320 (GJQ69_05310) | dapA | 1100241..1101131 (-) | 891 | WP_174193192.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| GJQ69_RS05325 (GJQ69_05315) | asd | 1101154..1102233 (-) | 1080 | WP_174193193.1 | aspartate-semialdehyde dehydrogenase | - |
| GJQ69_RS05330 (GJQ69_05320) | queA | 1102662..1103708 (+) | 1047 | WP_174193195.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| GJQ69_RS05335 (GJQ69_05325) | tgt | 1103748..1104878 (+) | 1131 | WP_086036845.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| GJQ69_RS05340 (GJQ69_05330) | yajC | 1104976..1105410 (+) | 435 | WP_086035717.1 | preprotein translocase subunit YajC | - |
| GJQ69_RS05345 (GJQ69_05335) | - | 1105534..1105944 (+) | 411 | WP_157658932.1 | TIGR04086 family membrane protein | - |
| GJQ69_RS05350 (GJQ69_05340) | scfA | 1106020..1106166 (+) | 147 | WP_086035715.1 | six-cysteine ranthipeptide SCIFF | - |
| GJQ69_RS05355 (GJQ69_05345) | scfB | 1106262..1107623 (+) | 1362 | WP_174193197.1 | thioether cross-link-forming SCIFF peptide maturase | - |
| GJQ69_RS05360 (GJQ69_05350) | - | 1107944..1108585 (+) | 642 | WP_086035713.1 | stage II sporulation protein M | - |
| GJQ69_RS05365 (GJQ69_05355) | xerD | 1108602..1109495 (+) | 894 | WP_086035712.1 | site-specific tyrosine recombinase XerD | - |
| GJQ69_RS05370 (GJQ69_05360) | - | 1109528..1110493 (+) | 966 | WP_157658931.1 | YesL family protein | - |
| GJQ69_RS05375 (GJQ69_05365) | - | 1110592..1111704 (-) | 1113 | WP_174193199.1 | tyrosine recombinase XerC | - |
| GJQ69_RS05380 (GJQ69_05370) | - | 1111771..1112565 (-) | 795 | WP_086035709.1 | DUF6873 family GME fold protein | - |
| GJQ69_RS05385 (GJQ69_05375) | radA | 1112771..1114162 (-) | 1392 | WP_086035708.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 463 a.a. Molecular weight: 50913.41 Da Isoelectric Point: 6.1857
>NTDB_id=400716 GJQ69_RS05385 WP_086035708.1 1112771..1114162(-) (radA) [Caproicibacterium lactatifermentans strain LBM19010]
MAGKLKSIYRCTECGYESAKWYGKCPECGAWNTMSEALQEPAVSMRRGSIGQGIYHQTAPQATPIREISMEEEPRYKTGV
SELDRVLGGGIVKGSIILISGEPGIGKSTILTQICAYLGNTLKILYVSGEESSRQIKLRANRLGVEPDNLYILTETDIQR
VLEQVRTEKPDLLMIDSIQTMNDTELNSAPGSVTQVRECTNAIMHIAKGMEIPAIMVGHVNKDGAIAGPKVLEHIVDAVL
YFEGDRQMSYRILRAVKNRYGSTNEIGVFDMEETGLHQVENPSASMLTGRPTNVSGTCVTCVMEGSRPILAELQALVTSS
GFGNPRRMATGFDYNRMNLLLAVLEKRAGYYFSNLDAYLNVVGGLRLDEPACDLAVSMALVSSLKDVPIADDAVIFGEVG
LTGEVRSVMHAEQRIREAERMGFHRCILPWYNLKYLSGRQANTTIQLTGVKNVRQAFAALQQE
MAGKLKSIYRCTECGYESAKWYGKCPECGAWNTMSEALQEPAVSMRRGSIGQGIYHQTAPQATPIREISMEEEPRYKTGV
SELDRVLGGGIVKGSIILISGEPGIGKSTILTQICAYLGNTLKILYVSGEESSRQIKLRANRLGVEPDNLYILTETDIQR
VLEQVRTEKPDLLMIDSIQTMNDTELNSAPGSVTQVRECTNAIMHIAKGMEIPAIMVGHVNKDGAIAGPKVLEHIVDAVL
YFEGDRQMSYRILRAVKNRYGSTNEIGVFDMEETGLHQVENPSASMLTGRPTNVSGTCVTCVMEGSRPILAELQALVTSS
GFGNPRRMATGFDYNRMNLLLAVLEKRAGYYFSNLDAYLNVVGGLRLDEPACDLAVSMALVSSLKDVPIADDAVIFGEVG
LTGEVRSVMHAEQRIREAERMGFHRCILPWYNLKYLSGRQANTTIQLTGVKNVRQAFAALQQE
Nucleotide
Download Length: 1392 bp
>NTDB_id=400716 GJQ69_RS05385 WP_086035708.1 1112771..1114162(-) (radA) [Caproicibacterium lactatifermentans strain LBM19010]
ATGGCAGGAAAACTAAAAAGTATTTATAGATGTACAGAATGCGGATATGAATCTGCAAAATGGTATGGAAAATGTCCGGA
ATGCGGTGCATGGAATACCATGTCTGAAGCGCTGCAGGAGCCAGCTGTTTCGATGCGGCGCGGTAGTATAGGGCAGGGAA
TTTATCATCAAACAGCGCCGCAGGCGACACCAATTCGAGAAATTAGCATGGAGGAGGAGCCACGCTATAAAACGGGCGTT
TCGGAACTGGACCGCGTTCTAGGTGGTGGAATTGTAAAAGGTTCCATCATCTTAATTAGTGGTGAACCGGGAATCGGTAA
GTCAACGATATTAACGCAGATTTGCGCTTATTTAGGAAATACTCTGAAAATTCTATATGTTTCTGGTGAGGAGTCCAGCC
GACAGATTAAGCTAAGGGCAAACCGATTGGGAGTGGAGCCAGACAATCTTTATATTTTGACGGAAACAGATATACAAAGA
GTTTTGGAGCAGGTCCGAACGGAAAAACCGGATTTATTGATGATTGACTCTATTCAAACGATGAATGATACAGAATTAAA
CTCCGCTCCCGGCAGCGTTACACAGGTTCGTGAATGCACAAATGCGATTATGCATATCGCAAAAGGAATGGAGATTCCTG
CAATCATGGTAGGTCATGTCAACAAAGACGGAGCCATTGCTGGGCCGAAGGTCTTGGAACATATTGTTGATGCGGTTTTA
TATTTTGAAGGTGACCGTCAGATGAGCTACCGCATCTTGCGCGCGGTAAAAAACCGGTATGGCTCCACCAATGAAATTGG
TGTTTTCGATATGGAAGAAACGGGGCTGCATCAAGTAGAAAACCCGTCAGCATCTATGCTGACGGGTCGGCCAACGAATG
TTTCCGGTACTTGTGTTACCTGTGTGATGGAAGGCAGCCGTCCTATATTGGCGGAGCTGCAGGCACTGGTCACTTCGTCC
GGCTTTGGGAATCCCAGAAGAATGGCAACCGGCTTTGACTATAACCGCATGAATTTACTCCTTGCGGTGCTGGAAAAGCG
GGCGGGCTATTATTTTTCAAATCTTGATGCCTATTTAAATGTAGTAGGCGGTCTGCGTTTGGACGAACCTGCGTGTGATT
TGGCGGTATCCATGGCGCTGGTTTCCAGCCTGAAGGATGTACCGATTGCCGATGATGCGGTCATTTTTGGAGAAGTGGGC
TTAACGGGAGAGGTTCGTTCAGTTATGCATGCAGAACAGCGTATCAGAGAAGCAGAACGAATGGGTTTTCATCGATGCAT
TCTTCCGTGGTACAATTTAAAGTATCTTAGCGGCCGGCAGGCAAATACAACGATACAGCTGACCGGCGTTAAAAATGTGA
GACAGGCTTTTGCGGCGCTTCAGCAGGAGTAG
ATGGCAGGAAAACTAAAAAGTATTTATAGATGTACAGAATGCGGATATGAATCTGCAAAATGGTATGGAAAATGTCCGGA
ATGCGGTGCATGGAATACCATGTCTGAAGCGCTGCAGGAGCCAGCTGTTTCGATGCGGCGCGGTAGTATAGGGCAGGGAA
TTTATCATCAAACAGCGCCGCAGGCGACACCAATTCGAGAAATTAGCATGGAGGAGGAGCCACGCTATAAAACGGGCGTT
TCGGAACTGGACCGCGTTCTAGGTGGTGGAATTGTAAAAGGTTCCATCATCTTAATTAGTGGTGAACCGGGAATCGGTAA
GTCAACGATATTAACGCAGATTTGCGCTTATTTAGGAAATACTCTGAAAATTCTATATGTTTCTGGTGAGGAGTCCAGCC
GACAGATTAAGCTAAGGGCAAACCGATTGGGAGTGGAGCCAGACAATCTTTATATTTTGACGGAAACAGATATACAAAGA
GTTTTGGAGCAGGTCCGAACGGAAAAACCGGATTTATTGATGATTGACTCTATTCAAACGATGAATGATACAGAATTAAA
CTCCGCTCCCGGCAGCGTTACACAGGTTCGTGAATGCACAAATGCGATTATGCATATCGCAAAAGGAATGGAGATTCCTG
CAATCATGGTAGGTCATGTCAACAAAGACGGAGCCATTGCTGGGCCGAAGGTCTTGGAACATATTGTTGATGCGGTTTTA
TATTTTGAAGGTGACCGTCAGATGAGCTACCGCATCTTGCGCGCGGTAAAAAACCGGTATGGCTCCACCAATGAAATTGG
TGTTTTCGATATGGAAGAAACGGGGCTGCATCAAGTAGAAAACCCGTCAGCATCTATGCTGACGGGTCGGCCAACGAATG
TTTCCGGTACTTGTGTTACCTGTGTGATGGAAGGCAGCCGTCCTATATTGGCGGAGCTGCAGGCACTGGTCACTTCGTCC
GGCTTTGGGAATCCCAGAAGAATGGCAACCGGCTTTGACTATAACCGCATGAATTTACTCCTTGCGGTGCTGGAAAAGCG
GGCGGGCTATTATTTTTCAAATCTTGATGCCTATTTAAATGTAGTAGGCGGTCTGCGTTTGGACGAACCTGCGTGTGATT
TGGCGGTATCCATGGCGCTGGTTTCCAGCCTGAAGGATGTACCGATTGCCGATGATGCGGTCATTTTTGGAGAAGTGGGC
TTAACGGGAGAGGTTCGTTCAGTTATGCATGCAGAACAGCGTATCAGAGAAGCAGAACGAATGGGTTTTCATCGATGCAT
TCTTCCGTGGTACAATTTAAAGTATCTTAGCGGCCGGCAGGCAAATACAACGATACAGCTGACCGGCGTTAAAAATGTGA
GACAGGCTTTTGCGGCGCTTCAGCAGGAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
52.747 |
98.272 |
0.518 |
| radA | Streptococcus pneumoniae Rx1 |
47.807 |
98.488 |
0.471 |
| radA | Streptococcus pneumoniae D39 |
47.807 |
98.488 |
0.471 |
| radA | Streptococcus pneumoniae R6 |
47.807 |
98.488 |
0.471 |
| radA | Streptococcus pneumoniae TIGR4 |
47.807 |
98.488 |
0.471 |
| radA | Streptococcus mitis SK321 |
47.807 |
98.488 |
0.471 |
| radA | Streptococcus mitis NCTC 12261 |
47.807 |
98.488 |
0.471 |