Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SGGBAA2069_RS09540 Genome accession   NC_015215
Coordinates   1918711..1919226 (-) Length   171 a.a.
NCBI ID   WP_013643415.1    Uniprot ID   A0A1I7G9C6
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1913711..1924226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS09510 (SGGBAA2069_c18570) - 1915023..1915967 (+) 945 WP_013643409.1 magnesium transporter CorA family protein -
  SGGBAA2069_RS09515 (SGGBAA2069_c18580) - 1916386..1917042 (+) 657 WP_013643410.1 DUF1129 domain-containing protein -
  SGGBAA2069_RS09520 (SGGBAA2069_c18590) - 1917088..1917537 (-) 450 WP_013643411.1 hypothetical protein -
  SGGBAA2069_RS09525 (SGGBAA2069_c18600) - 1917539..1917748 (-) 210 WP_013643412.1 helix-turn-helix domain-containing protein -
  SGGBAA2069_RS09530 (SGGBAA2069_c18610) - 1917751..1918275 (-) 525 WP_013643413.1 hypothetical protein -
  SGGBAA2069_RS09535 (SGGBAA2069_c18620) rpsR 1918411..1918650 (-) 240 WP_013643414.1 30S ribosomal protein S18 -
  SGGBAA2069_RS09540 (SGGBAA2069_c18630) ssbA 1918711..1919226 (-) 516 WP_013643415.1 single-stranded DNA-binding protein Machinery gene
  SGGBAA2069_RS09545 (SGGBAA2069_c18640) rpsF 1919238..1919528 (-) 291 WP_003066359.1 30S ribosomal protein S6 -
  SGGBAA2069_RS09550 - 1919753..1919917 (-) 165 WP_009854901.1 hypothetical protein -
  SGGBAA2069_RS09555 (SGGBAA2069_c18650) - 1920143..1920691 (-) 549 WP_043913772.1 biotin transporter BioY -
  SGGBAA2069_RS09560 (SGGBAA2069_c18660) bioD 1920691..1921359 (-) 669 WP_013643417.1 dethiobiotin synthase -
  SGGBAA2069_RS09565 (SGGBAA2069_c18670) bioB 1921352..1922287 (-) 936 WP_013643418.1 biotin synthase BioB -
  SGGBAA2069_RS09570 (SGGBAA2069_c18680) ahpF 1922565..1924103 (-) 1539 WP_013643419.1 alkyl hydroperoxide reductase subunit F -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18933.52 Da        Isoelectric Point: 4.7187

>NTDB_id=40067 SGGBAA2069_RS09540 WP_013643415.1 1918711..1919226(-) (ssbA) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADNFQILESRATREGQSGGSYNGGFNNNNSSFGGSSNDGGFSSQTSQSQTPNFGRDESPFGNSN
PMDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=40067 SGGBAA2069_RS09540 WP_013643415.1 1918711..1919226(-) (ssbA) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGATTAATAATGTAGTACTTGTCGGTCGTATGACTCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCCGTTGC
CACATTTACACTTGCTGTAAACCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAATTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTACGTAACAGAGATTGTTGCAGATAATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCATATAACGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACG
ATGGTGGTTTCTCATCGCAAACTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAAT
CCAATGGACATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I7G9C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.222

100

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.596

Multiple sequence alignment