Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GJD93_RS08930 Genome accession   NZ_CP046045
Coordinates   1633171..1633551 (-) Length   126 a.a.
NCBI ID   WP_004976793.1    Uniprot ID   A0A2A5PJN4
Organism   Acinetobacter towneri strain 19110F47     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1628171..1638551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS08900 (GJD93_08895) tadA 1628387..1628878 (-) 492 WP_004976782.1 tRNA adenosine(34) deaminase TadA -
  GJD93_RS08905 (GJD93_08900) - 1628906..1630027 (-) 1122 WP_004976784.1 enoyl-CoA hydratase/isomerase family protein -
  GJD93_RS08910 (GJD93_08905) ung 1630024..1630737 (-) 714 WP_004976786.1 uracil-DNA glycosylase -
  GJD93_RS08915 (GJD93_08910) - 1630775..1631371 (-) 597 WP_104851897.1 6-pyruvoyl trahydropterin synthase family protein -
  GJD93_RS08920 (GJD93_08915) gspK 1631554..1632537 (-) 984 WP_171501107.1 type II secretion system minor pseudopilin GspK -
  GJD93_RS08925 (GJD93_08920) xcpW 1632551..1633174 (-) 624 WP_131261480.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GJD93_RS08930 (GJD93_08925) xcpV 1633171..1633551 (-) 381 WP_004976793.1 type II secretion system minor pseudopilin GspI Machinery gene
  GJD93_RS08935 (GJD93_08930) - 1633541..1634092 (-) 552 WP_131261481.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GJD93_RS08940 (GJD93_08935) - 1634099..1634713 (-) 615 WP_004976797.1 TetR/AcrR family transcriptional regulator -
  GJD93_RS08945 (GJD93_08940) - 1634807..1635580 (-) 774 WP_154320797.1 TatD family hydrolase -
  GJD93_RS08950 (GJD93_08945) - 1635605..1635946 (-) 342 WP_026438361.1 PilZ domain-containing protein -
  GJD93_RS08955 (GJD93_08950) - 1635957..1636946 (-) 990 WP_154320798.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  GJD93_RS08960 (GJD93_08955) kdsB 1636961..1637722 (-) 762 WP_004976805.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13964.99 Da        Isoelectric Point: 6.2920

>NTDB_id=400642 GJD93_RS08930 WP_004976793.1 1633171..1633551(-) (xcpV) [Acinetobacter towneri strain 19110F47]
MKAKGFTLLEVMVALAIFATAAMAMTKVAMQYTQSTANAILRTKAQFVALNEVALMEMNRQWLSGTESKQVTQQGETWQI
DKSTQPTISPNVQRVDLQISLYNQDTGQVEAGVTSLVFFNAREQQS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=400642 GJD93_RS08930 WP_004976793.1 1633171..1633551(-) (xcpV) [Acinetobacter towneri strain 19110F47]
ATGAAAGCTAAAGGATTTACACTACTTGAAGTTATGGTGGCTTTGGCAATTTTTGCAACAGCAGCTATGGCAATGACCAA
AGTGGCGATGCAATATACCCAATCCACCGCCAATGCAATTTTAAGAACCAAAGCACAATTTGTGGCTTTGAATGAAGTGG
CATTGATGGAAATGAATCGGCAATGGTTAAGTGGAACAGAGTCAAAGCAAGTGACACAACAGGGCGAAACATGGCAAATT
GACAAGTCCACACAGCCAACCATTAGTCCTAATGTGCAACGTGTCGATCTTCAAATCAGTTTATATAATCAAGACACAGG
ACAAGTTGAAGCAGGAGTGACTTCTTTGGTGTTTTTTAATGCCCGTGAGCAGCAATCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PJN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

77.5

95.238

0.738

Multiple sequence alignment