Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GJD93_RS02940 Genome accession   NZ_CP046045
Coordinates   389859..390494 (-) Length   211 a.a.
NCBI ID   WP_154320297.1    Uniprot ID   -
Organism   Acinetobacter towneri strain 19110F47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384859..395494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS02905 (GJD93_02900) mlaE 385063..385842 (+) 780 WP_154320294.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  GJD93_RS02910 (GJD93_02905) - 385842..386519 (+) 678 WP_131260598.1 outer membrane lipid asymmetry maintenance protein MlaD -
  GJD93_RS02915 (GJD93_02910) - 386535..387170 (+) 636 WP_154320295.1 phospholipid-binding protein MlaC -
  GJD93_RS02920 (GJD93_02915) - 387183..387470 (+) 288 WP_154320296.1 lipid asymmetry maintenance protein MlaB -
  GJD93_RS02925 (GJD93_02920) - 387602..388615 (-) 1014 WP_096901036.1 CorA family divalent cation transporter -
  GJD93_RS02930 (GJD93_02925) - 388770..389372 (+) 603 WP_026438479.1 TIGR00730 family Rossman fold protein -
  GJD93_RS02935 (GJD93_02930) - 389374..389784 (+) 411 WP_004974664.1 NUDIX hydrolase -
  GJD93_RS02940 (GJD93_02935) comF 389859..390494 (-) 636 WP_154320297.1 ComF family protein Machinery gene
  GJD93_RS02945 (GJD93_02940) recG 390513..392558 (-) 2046 WP_131260595.1 ATP-dependent DNA helicase RecG -
  GJD93_RS02950 (GJD93_02945) - 392595..393428 (+) 834 WP_154320298.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24544.59 Da        Isoelectric Point: 9.3037

>NTDB_id=400628 GJD93_RS02940 WP_154320297.1 389859..390494(-) (comF) [Acinetobacter towneri strain 19110F47]
MTQPINLLQCGIQWLCQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQNAPKIRFRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=400628 GJD93_RS02940 WP_154320297.1 389859..390494(-) (comF) [Acinetobacter towneri strain 19110F47]
ATGACTCAGCCGATCAATCTACTACAATGCGGCATACAATGGCTGTGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGATTGGAAGACATCCAACAGCAA
TTTCAAATTCAGAATGCGCCTAAAATCCGTTTTCGTCGGGTTTTAATTGTGGATGATGTGGTCACGACGGGCAGTTCAAT
TCATGCACTCAAACAGCAGTTGCTCAAGCTCGGCTGTCAAAAAGTCGAGGCGGTTTGTCTGGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.307

94.313

0.578
  comF Acinetobacter baumannii D1279779

60.804

94.313

0.573

Multiple sequence alignment