Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HUR93_RS01625 Genome accession   NZ_CP054662
Coordinates   356816..357580 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain IGC_RcoliRes_1.1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 351816..362580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR93_RS01600 yhhJ 353658..354782 (+) 1125 WP_001314210.1 ABC transporter permease -
  HUR93_RS01605 - 354855..355130 (+) 276 WP_001259388.1 type II toxin-antitoxin system HicA family toxin -
  HUR93_RS01610 - 355127..355486 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  HUR93_RS01615 nikR 355606..356007 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  HUR93_RS01620 nikE 356013..356819 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  HUR93_RS01625 amiE 356816..357580 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  HUR93_RS01630 nikC 357580..358413 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  HUR93_RS01635 nikB 358410..359354 (-) 945 WP_061892553.1 nickel ABC transporter permease subunit NikB -
  HUR93_RS01640 nikA 359354..360928 (-) 1575 WP_000953356.1 nickel ABC transporter substrate-binding protein -
  HUR93_RS01645 acpT 361039..361626 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=400536 HUR93_RS01625 WP_001136236.1 356816..357580(-) (amiE) [Escherichia coli strain IGC_RcoliRes_1.1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=400536 HUR93_RS01625 WP_001136236.1 356816..357580(-) (amiE) [Escherichia coli strain IGC_RcoliRes_1.1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment