Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   SGGBAA2069_RS06475 Genome accession   NC_015215
Coordinates   1296649..1298757 (+) Length   702 a.a.
NCBI ID   WP_012962041.1    Uniprot ID   A0A060RHT7
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1291649..1303757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS06440 (SGGBAA2069_c12330) - 1292092..1293042 (+) 951 WP_013643156.1 polysaccharide deacetylase family protein -
  SGGBAA2069_RS06450 (SGGBAA2069_c12350) - 1293621..1294217 (+) 597 WP_009854348.1 TetR/AcrR family transcriptional regulator -
  SGGBAA2069_RS06455 (SGGBAA2069_c12360) - 1294297..1294761 (-) 465 WP_013643158.1 hypothetical protein -
  SGGBAA2069_RS06460 (SGGBAA2069_c12370) - 1294879..1295079 (+) 201 WP_013643159.1 helix-turn-helix domain-containing protein -
  SGGBAA2069_RS06465 (SGGBAA2069_c12380) rplL 1295168..1295536 (-) 369 WP_009854351.1 50S ribosomal protein L7/L12 -
  SGGBAA2069_RS06470 (SGGBAA2069_c12390) rplJ 1295605..1296108 (-) 504 WP_009854352.1 50S ribosomal protein L10 -
  SGGBAA2069_RS06475 (SGGBAA2069_c12400) clpC 1296649..1298757 (+) 2109 WP_012962041.1 AAA family ATPase Regulator
  SGGBAA2069_RS06480 (SGGBAA2069_c12410) - 1298864..1299511 (+) 648 WP_013643160.1 endonuclease III domain-containing protein -
  SGGBAA2069_RS06485 (SGGBAA2069_c12420) - 1299620..1300288 (+) 669 WP_039694591.1 YoaK family protein -
  SGGBAA2069_RS06490 (SGGBAA2069_c12430) mmuM 1300328..1301278 (-) 951 WP_013643161.1 homocysteine S-methyltransferase -
  SGGBAA2069_RS06495 (SGGBAA2069_c12440) - 1301291..1302667 (-) 1377 WP_013643162.1 amino acid permease -
  SGGBAA2069_RS06500 (SGGBAA2069_c12450) yihA 1302966..1303559 (-) 594 WP_012962046.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77210.96 Da        Isoelectric Point: 4.7283

>NTDB_id=40053 SGGBAA2069_RS06475 WP_012962041.1 1296649..1298757(+) (clpC) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MANNNFYGRDPFGNMDDIFNELMGNMGGYNSENRRYLINGREVTPEEFAQYRQTGKLPGNAEYQEGAPTSAPKEDGILAK
LGTNLTERARANELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNLVKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPATDVKSLEKEIADQKEKQENAVAKEDYEAALNAKVRIEELQKQIDNHTEGQKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQDDKDKKIMDRIAPYFRPEFLNRFNGIIEFSHLTKEDLNDIVDLMLDEVSKTIAKKGIDLV
VSDAAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=40053 SGGBAA2069_RS06475 WP_012962041.1 1296649..1298757(+) (clpC) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGGCAAATAATAATTTTTACGGAAGAGATCCTTTTGGAAATATGGATGACATTTTTAATGAACTTATGGGTAACATGGG
CGGGTACAATTCAGAAAACAGACGCTATTTGATTAATGGGCGCGAAGTTACTCCTGAAGAATTTGCACAATATCGCCAAA
CAGGTAAGCTCCCTGGAAACGCGGAATACCAAGAAGGTGCGCCTACTTCTGCTCCTAAAGAAGATGGTATCTTGGCAAAA
TTAGGAACAAACTTGACCGAACGCGCACGCGCTAACGAACTCGACCCTGTTATTGGACGTAACAAAGAAATCCAAGAAAC
TGCTGAAATCTTGTCACGTCGTACCAAAAACAATCCTGTCCTTGTTGGGGATGCAGGTGTTGGTAAAACAGCCGTTGTCG
AAGGCTTAGCGCAAGCTATTGTCAATGGTGATGTGCCAGCAGCTATCAAAAATAAAGAAATTATTTCTATTGATATTTCT
GGTCTTGAAGCTGGCACACAATATCGTGGTGCTTTTGAAGAAAATATCCAAAACCTTGTCAAAGAAGTTAAAGACGCTGG
TAATATCATTCTCTTCTTTGATGAAATCCACCAAATTTTAGGCGCAGGGTCAACTGGTGGCGACTCTGGTTCGAAAGGCT
TAGCTGACATTCTCAAACCTGCACTTTCTCGTGGCGAATTGACCGTTATCGGTGCAACAACTCAAGACGAATATCGTAAT
ACTATTTTGAAGAATGCTGCGCTCGCTCGCCGTTTCAACGAAGTCAAAGTAAATGCTCCTTCTGCTCAAGATAGCTTTAA
TATTTTAATGGGAATTCGTGATTTATATGAAAAACACCACAACGTTATTCTCCCTGATAATGTGTTAAAAGCTGCTGTTG
ATTTTTCAATTCAATATATCCCACAACGTAGTTTACCAGATAAAGCTATTGACTTGATTGATATGACTGCTGCTCATTTG
GCTGCTCAACACCCTGCAACTGATGTCAAATCTCTTGAAAAGGAAATTGCAGACCAAAAAGAAAAACAAGAAAATGCTGT
GGCTAAAGAAGATTACGAAGCAGCTCTCAATGCCAAAGTTCGTATCGAAGAATTGCAAAAACAAATTGACAACCATACGG
AAGGGCAAAAAGTTACAGCTACCGTTAATGATGTGGCAGAATCTGTCGAACGATTAACTGGTGTTCCCGTGTCAAATATG
GGGGCAAGTGATATTGAACGCTTGAAAGAATTAGCTAGCCGTTTGAAAGGTAAAGTCATCGGACAAGATGAGGCTGTTGA
AGCCGTCTCACGTGCCATTCGTCGTAACCGTGCTGGTTTTGACGAAGGTAATCGACCAATTGGTAGTTTCCTCTTTGTCG
GTCCTACTGGCGTTGGTAAGACAGAGCTTGCTAAACAATTAGCCCTTGATATGTTCGGCTCAAAAGATGCTATTATCCGC
CTTGACATGTCTGAATACTCTGATCGTACAGCTGTTTCTAAATTAATCGGTACAACTGCTGGCTATGTTGGCTACGACGA
CAATAGCAACACGCTTACTGAACGTGTTCGTCGTAACCCATACTCAATTGTTCTTCTTGATGAAATTGAAAAAGCTGACC
CTCAAGTCATCACACTTCTTCTCCAAGTTTTGGATGATGGTCGTTTGACAGACGGTCAAGGTAATACGATTAACTTTAAG
AATACCGTCATCATTGCTACCTCTAATGCTGGATTCGGCAACGAAGCTTTGACTGGTCAAGATGATAAAGATAAGAAAAT
TATGGATCGTATCGCTCCATACTTCCGCCCAGAATTTCTTAACCGTTTCAACGGTATTATCGAATTCTCTCACTTGACTA
AAGAAGATTTGAACGACATTGTTGACTTAATGCTTGACGAAGTTAGCAAGACCATTGCCAAGAAAGGCATTGATTTGGTG
GTTAGTGATGCTGCTAAACAACACCTTATCGAAGAAGGTTATGATGAAGCCATGGGTGTTCGACCACTCCGCCGTGTCAT
TGAACAAGAAATCCGCGATAAAATCACTGATTTCTATCTTGATCACACAGATGTTAAACACCTTAAAGCTGACATGGTTG
ACGGAGAACTAGTCATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-683)

AAA domain (Cdc48 subfamily) (AAA_2)

(445-604)

AAA lid domain (AAA_lid_9)

(262-355)

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RHT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

48.927

99.573

0.487
  clpE Streptococcus mutans UA159

49.451

90.741

0.449
  clpE Streptococcus pneumoniae Rx1

48.594

91.168

0.443
  clpE Streptococcus pneumoniae D39

48.594

91.168

0.443
  clpE Streptococcus pneumoniae R6

48.594

91.168

0.443
  clpE Streptococcus pneumoniae TIGR4

48.661

90.456

0.44
  clpC Bacillus subtilis subsp. subtilis str. 168

45.127

95.014

0.429
  clpC Streptococcus pneumoniae Rx1

43.76

90.171

0.395
  clpC Streptococcus pneumoniae D39

43.76

90.171

0.395
  clpC Streptococcus pneumoniae TIGR4

43.81

89.744

0.393
  clpC Streptococcus thermophilus LMD-9

43.387

88.319

0.383
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.457

88.177

0.383
  clpC Streptococcus thermophilus LMG 18311

43.204

88.034

0.38
  clpC Streptococcus mutans UA159

42.697

88.746

0.379

Multiple sequence alignment