Detailed information NTG0400527

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GJS33_RS05490
• Genome accession: NZ_CP046041
• Coordinates: 1163581..1164810 (-)
• Length: 409 a.a.
• NCBI ID: WP_012677889.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain AZ-45470
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1158581..1169810

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GJS33_RS05480 (GJS33_05480)	-	1159597..1162599 (-)	3003	WP_154299001.1	leucine-rich repeat domain-containing protein	-
GJS33_RS05485 (GJS33_05485)	yihA	1162972..1163571 (-)	600	WP_111692488.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
GJS33_RS05490 (GJS33_05490)	clpX	1163581..1164810 (-)	1230	WP_012677889.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GJS33_RS05495 (GJS33_05495)	-	1164846..1165016 (-)	171	WP_012515696.1	hypothetical protein	-
GJS33_RS05500 (GJS33_05500)	-	1165036..1165533 (-)	498	WP_154299002.1	dihydrofolate reductase	-
GJS33_RS05505 (GJS33_05505)	-	1165614..1166453 (-)	840	WP_043029774.1	thymidylate synthase	-
GJS33_RS05510 (GJS33_05510)	-	1166638..1167813 (+)	1176	WP_154299003.1	hydroxymethylglutaryl-CoA synthase	-
GJS33_RS05515 (GJS33_05515)	-	1167800..1169083 (+)	1284	WP_195759360.1	hydroxymethylglutaryl-CoA reductase, degradative	-

Sequence

Protein

• Length: 409 a.a.
• Molecular weight: 45197.77 Da
• Isoelectric Point: 4.5726

>NTDB_id=400527 GJS33_RS05490 WP_012677889.1 1163581..1164810(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MAGNRSNDIKVHCSFCGKSQDEVKKIIAGNNVFICNECVALSQEIIKEELAEEVLADLTEVPKPKELLEILNQYVIGQER
AKRALSVAVYNHYKRISFTESRDDDDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATSLTEAGYVGEDVENI
LLKLIQAADYNVERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTK
NILFIVGGAFDGIEEIVKQRLGEKIIGFGQNSRKIDDNASYMQEIIAEDIQKFGLIPEFIGRLPVVAALEQLNTEDLIRI
LTEPRNALVKQYQALLSYDGVELEFEKGALEAIAGRAIERKTGARGLRSIIEETMLDIMFEVPSQEEVIKVRITKEAVEG
QSKPILEIA

Nucleotide

• Length: 1230 bp

>NTDB_id=400527 GJS33_RS05490 WP_012677889.1 1163581..1164810(-) (clpX) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGGCAGGAAATCGTAGTAACGATATTAAGGTTCATTGCTCGTTTTGCGGCAAGAGCCAAGACGAAGTGAAAAAAATTAT
TGCAGGCAATAACGTCTTTATTTGTAACGAATGTGTTGCCTTATCACAAGAAATCATCAAGGAAGAATTGGCAGAAGAGG
TTCTCGCTGATCTGACTGAGGTACCAAAGCCAAAAGAGCTGCTTGAGATTTTAAATCAATACGTCATTGGGCAGGAGCGT
GCTAAGAGAGCCTTATCAGTTGCAGTTTACAACCACTACAAGAGGATTTCATTTACTGAGAGTCGTGACGATGATGATGT
GGATTTGCAGAAGTCCAATATTCTGATGATTGGACCAACAGGCTCAGGTAAGACCTTTTTAGCCCAGACTCTGGCTAAGA
GCCTTAATGTTCCATTTGCTATTGCTGATGCAACCTCTTTGACTGAGGCAGGCTATGTCGGAGAGGATGTGGAAAATATC
CTTCTGAAATTAATTCAAGCCGCTGATTACAATGTTGAACGTGCAGAGCGTGGCATTATTTATGTTGATGAAATTGATAA
AATCGCTAAAAAAGGTGAGAATGTCTCTATCACTCGTGATGTATCAGGAGAAGGTGTCCAACAAGCCTTGCTAAAAATTA
TTGAGGGAACGGTTGCTAGTGTTCCACCGCAAGGTGGTCGTAAGCACCCAAACCAAGAGATGATACAGATTGATACCAAA
AATATCTTGTTTATTGTCGGAGGCGCCTTTGATGGTATCGAAGAAATTGTCAAGCAGCGCTTGGGGGAAAAGATCATTGG
CTTTGGGCAAAATAGTCGAAAGATTGATGACAATGCCTCCTATATGCAGGAGATCATTGCTGAGGATATTCAAAAATTTG
GTCTGATTCCCGAATTTATTGGACGCTTGCCTGTTGTGGCAGCGCTTGAGCAGCTTAATACCGAGGATTTGATTCGTATT
TTAACAGAGCCTAGAAATGCTCTTGTGAAGCAATATCAAGCCTTGCTGTCATATGATGGCGTAGAGCTTGAGTTTGAAAA
GGGGGCTCTGGAGGCTATTGCAGGTAGGGCTATTGAGCGCAAGACTGGTGCGCGTGGTCTGAGGTCTATTATTGAAGAAA
CCATGCTGGATATCATGTTTGAGGTGCCAAGCCAAGAGGAAGTAATCAAGGTACGCATTACTAAGGAAGCTGTCGAAGGT
CAATCAAAGCCTATTTTAGAGATAGCCTAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (312-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (110-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	88.753	100	0.888
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.853	98.044	0.577