Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HR116_RS20845 Genome accession   NZ_CP054591
Coordinates   4529711..4530040 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain CDN118     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4524711..4535040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR116_RS20830 uvrB 4526098..4528110 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  HR116_RS20835 - 4528298..4529494 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  HR116_RS20845 comEA/comE1 4529711..4530040 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HR116_RS20850 - 4530231..4532228 (-) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HR116_RS20855 - 4532426..4533463 (-) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  HR116_RS20860 - 4533463..4534425 (-) 963 WP_016253165.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=400396 HR116_RS20845 WP_003104586.1 4529711..4530040(-) (comEA/comE1) [Pseudomonas aeruginosa strain CDN118]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=400396 HR116_RS20845 WP_003104586.1 4529711..4530040(-) (comEA/comE1) [Pseudomonas aeruginosa strain CDN118]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAATTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment