Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GJU84_RS07455 Genome accession   NZ_CP046028
Coordinates   1522880..1523740 (-) Length   286 a.a.
NCBI ID   WP_105965344.1    Uniprot ID   A0AAE5T1T0
Organism   Staphylococcus chromogenes strain 1401     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1517880..1528740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJU84_RS07440 (GJU84_07380) xerC 1518386..1519276 (-) 891 WP_165885752.1 tyrosine recombinase XerC -
  GJU84_RS07445 (GJU84_07385) trmFO 1519398..1520702 (-) 1305 WP_145401004.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GJU84_RS07450 (GJU84_07390) topA 1520715..1522784 (-) 2070 WP_037573320.1 type I DNA topoisomerase -
  GJU84_RS07455 (GJU84_07395) dprA 1522880..1523740 (-) 861 WP_105965344.1 DNA-processing protein DprA Machinery gene
  GJU84_RS07460 (GJU84_07400) sucD 1524045..1524953 (-) 909 WP_037573316.1 succinate--CoA ligase subunit alpha -
  GJU84_RS07465 (GJU84_07405) sucC 1524974..1526140 (-) 1167 WP_145401005.1 ADP-forming succinate--CoA ligase subunit beta -
  GJU84_RS07470 (GJU84_07410) - 1526365..1526634 (-) 270 WP_105986155.1 hypothetical protein -
  GJU84_RS07475 (GJU84_07415) - 1526713..1527492 (-) 780 WP_037573308.1 ribonuclease HII -
  GJU84_RS07480 (GJU84_07420) ylqF 1527473..1528363 (-) 891 WP_145401007.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32284.37 Da        Isoelectric Point: 8.8761

>NTDB_id=400363 GJU84_RS07455 WP_105965344.1 1522880..1523740(-) (dprA) [Staphylococcus chromogenes strain 1401]
MHYAGFTTNQIYQLFTSPVKSLQFEITPILKNHPLIHQKSHFYKKFLAFQSLDIDIIQSQLEAHRIVPLPIIDARFPSLL
KEIYHPPLLLYCKGNLNLFNDACYYPLAVVGARDFTAYGERAVEYLLHQMKHQPIVIVSGLAKGTDALAHHYALCNNIPT
IAVLGFGHFHHYPKHTQTLRTHIDKYAGGLIISEYPPTTAPAKFRFPERNRIISGLSKGVLVTEAKERSGALITLDQALE
QNRNVYVLPGDMFNPNTKGNLLRVKEGAEIVLSAEDILKDMNTSIQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=400363 GJU84_RS07455 WP_105965344.1 1522880..1523740(-) (dprA) [Staphylococcus chromogenes strain 1401]
ATGCATTATGCTGGTTTTACGACAAATCAAATCTATCAACTATTTACATCTCCTGTGAAATCTTTACAATTTGAAATCAC
ACCTATTTTAAAAAATCATCCTCTAATCCATCAGAAGTCTCATTTTTACAAAAAATTTTTAGCTTTCCAATCCTTAGACA
TTGATATCATTCAGTCTCAATTAGAGGCGCATCGTATTGTACCCCTCCCAATCATTGATGCACGATTTCCTTCATTATTA
AAAGAAATATATCATCCACCGTTATTACTCTATTGTAAGGGGAATTTAAATTTATTTAATGATGCGTGTTATTATCCTTT
AGCAGTTGTAGGCGCAAGAGATTTTACAGCTTATGGTGAACGGGCAGTTGAGTATTTATTACATCAGATGAAGCATCAGC
CTATCGTTATTGTGTCTGGTTTGGCAAAAGGAACTGATGCATTAGCCCATCATTATGCATTGTGTAACAACATCCCTACA
ATAGCTGTATTGGGCTTTGGTCATTTTCACCATTATCCTAAACATACTCAAACCCTAAGAACACATATTGATAAATATGC
AGGGGGGTTAATTATCAGCGAATATCCACCAACCACTGCTCCAGCAAAATTTAGATTTCCTGAACGCAATCGTATCATAA
GTGGCTTAAGTAAAGGAGTGCTCGTCACAGAGGCGAAAGAAAGAAGCGGTGCATTAATAACATTAGATCAAGCGTTAGAA
CAAAATCGTAATGTTTATGTTTTACCTGGAGATATGTTTAACCCCAATACAAAAGGAAATTTATTGCGTGTAAAGGAAGG
TGCCGAAATCGTACTTTCTGCGGAGGATATTTTAAAAGATATGAATACGTCAATTCAGTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.65

98.951

0.521
  dprA Staphylococcus aureus N315

52.297

98.951

0.517
  dprA Bacillus subtilis subsp. subtilis str. 168

38.007

94.755

0.36

Multiple sequence alignment