Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   GJV52_RS12985 Genome accession   NZ_CP046027
Coordinates   2601888..2605529 (+) Length   1213 a.a.
NCBI ID   WP_100562599.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596888..2610529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS12970 (GJV52_12970) mfd 2596897..2600307 (+) 3411 WP_100562603.1 transcription-repair coupling factor -
  GJV52_RS12975 (GJV52_12975) - 2600383..2600574 (-) 192 Protein_2537 metallophosphoesterase -
  GJV52_RS12980 (GJV52_12980) - 2600884..2601786 (+) 903 WP_100562601.1 Dyp-type peroxidase -
  GJV52_RS12985 (GJV52_12985) recB 2601888..2605529 (+) 3642 WP_100562599.1 exodeoxyribonuclease V subunit beta Machinery gene
  GJV52_RS12990 (GJV52_12990) - 2605630..2606589 (+) 960 WP_154212925.1 IS30 family transposase -
  GJV52_RS12995 (GJV52_12995) - 2606659..2606862 (-) 204 WP_095503459.1 (2Fe-2S)-binding protein -
  GJV52_RS13000 (GJV52_13000) - 2607106..2607906 (-) 801 WP_154212861.1 IS3 family transposase -
  GJV52_RS13005 (GJV52_13005) - 2607903..2608259 (-) 357 WP_100564181.1 helix-turn-helix domain-containing protein -
  GJV52_RS13010 (GJV52_13010) - 2608370..2608552 (-) 183 WP_095503130.1 hypothetical protein -
  GJV52_RS13015 (GJV52_13015) gshB 2608695..2609651 (+) 957 WP_100564183.1 glutathione synthase -
  GJV52_RS13020 (GJV52_13020) - 2609736..2610140 (+) 405 WP_095503128.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 1213 a.a.        Molecular weight: 136611.84 Da        Isoelectric Point: 4.9161

>NTDB_id=400336 GJV52_RS12985 WP_100562599.1 2601888..2605529(+) (recB) [Neisseria brasiliensis strain N.177.16]
MSHSVHAFAPLSIPIQGTNLIEASAGTGKTYGIAALFTRLIVLEKMPVDKILVVTFTKAATAELKTRLRARLDEVLQALE
SVANAAEDSDGLNQYCEREHPGDVFLKGLLQQALAQESQARLIVRLKAAIGDFDNASIYTIHGFCQRVLRDFAFLCQTQF
DVELADDSRERLLVPAQDFWRERISNDPMAAELVFRHRETPQTMLAEIRPFVSRPYLVFRRPENGLAAARTDLQQAWENI
QGRLKNIEEAFWQAFDGGILSGTFFKKPSYQSLFAALWHAAETGRLPPSDADSLKRLENLRADVLPKKLKKKQSLSSQTE
AELHGLGLLGEKLQAAADEEENALTLLKLDLLDHINQALAEQKKSRRERTFDDLLLDVFNALQPANPHAQALAEAVAATW
QVALIDEFQDTDPLQYQIFSEIFIRQNKPLFLVGDPKQAIYSFRGADIYAYLQAAEDAQQHYTLATNFRSHAKLINGIGA
LFQCKNRPFVLENIDYNPVGAAREESRLSPSRPAVQVRWLHGNETEPLNKDVLRKRAAEYCADEIAFALNEAAEGRLNFK
ERPLESGDIAVLVRTHNEGSMIAQALKSRRIQSVLLHRESVFESPEAQGLAALLDFWLNPRRTESLRFALSGVLFGYDAD
ALYALNQSEAGLLAWIDSAERAAQLWQQKGIYTTMQHFSAEHGIEIRLLSDGNGRSLTNYHQLLERLSEENEQSHSPASL
HQWLLAQINLAENGKAGDNNVLRLESDEALVKIVTMHAAKGLQYPLVYCPFVWDAQDNKAHDWQILHRDGGESELLAEHQ
LDDDDHTQLADEEMAERLRLLYVALTRAEEQLSIYAAYCQDTDDNTFAYLLEGHADSTREAVKAAYEGERKAGKGAAEMA
MLKNNWARFINKQAENENTDFVFTEDTPPSAAYHSAKQTEVQYQAADIPPRGFEYIRHTSFTGLSRHVKAHDSEREELQP
SLDAAESHIRPSENVVEKIDHDELSIHHFPRGTNAGLCLHDMLENLDFQRSAAEQSEQILETLTRHGFEEKWLPAVMTML
DCCRETPISGKDTLSDIQPSERLPEMGFTLYMQDFNLAALRAWFAQPHLGLPPECIEAAQRLDFQDVQGYLNGFIDMTCI
ASDGQVCVIDYKSNYLGANAAAYTPQAMNEAMGEHHYYLQALIYAIAVGRYFKLRGLALPQIAVRYLFLRGMNGTENGIW
SWDIDAEDLADWV

Nucleotide


Download         Length: 3642 bp        

>NTDB_id=400336 GJV52_RS12985 WP_100562599.1 2601888..2605529(+) (recB) [Neisseria brasiliensis strain N.177.16]
ATGTCCCATTCCGTTCACGCTTTTGCGCCGCTGTCGATTCCCATTCAAGGCACCAACCTGATTGAAGCCTCCGCCGGCAC
CGGTAAAACTTACGGCATCGCAGCCCTATTTACCCGCCTGATTGTGTTGGAAAAAATGCCGGTGGATAAGATCTTGGTCG
TCACGTTTACCAAAGCCGCCACCGCCGAACTCAAAACCCGCTTGCGTGCGCGTTTGGACGAAGTATTGCAAGCTTTGGAA
AGCGTGGCAAACGCCGCCGAAGATTCAGACGGCCTCAATCAATATTGCGAACGCGAACACCCCGGCGATGTGTTTCTCAA
AGGCTTACTGCAACAAGCATTAGCGCAAGAAAGCCAAGCGCGTTTAATCGTGCGCCTGAAAGCGGCTATCGGCGATTTCG
ACAACGCTTCGATTTACACCATCCACGGCTTCTGCCAGCGCGTGTTGCGTGATTTCGCCTTTTTGTGCCAAACGCAATTT
GATGTCGAACTCGCCGACGACAGCCGCGAGCGTTTGCTGGTGCCGGCGCAGGATTTTTGGCGCGAACGGATCAGCAACGA
TCCGATGGCCGCCGAACTGGTGTTCCGCCACCGCGAAACGCCCCAAACCATGCTCGCCGAAATCCGCCCTTTCGTCAGCC
GCCCCTATCTGGTTTTCAGACGGCCTGAAAACGGTTTGGCCGCCGCGCGAACGGATTTGCAGCAAGCGTGGGAAAACATC
CAAGGCCGTCTGAAAAATATCGAAGAAGCGTTTTGGCAGGCATTTGACGGCGGCATTTTGAGCGGTACGTTTTTCAAAAA
ACCTTCCTATCAAAGCCTGTTTGCCGCACTTTGGCACGCCGCCGAAACCGGCCGTCTGCCCCCGTCCGACGCCGATTCGC
TCAAACGGCTGGAAAACCTGCGTGCCGACGTGCTGCCGAAAAAACTTAAAAAAAAACAATCCCTTAGCAGCCAGACTGAA
GCCGAACTGCACGGTTTGGGTTTGCTCGGCGAAAAACTGCAGGCCGCGGCCGACGAAGAAGAAAACGCCCTCACCCTGCT
CAAGCTCGACCTGCTCGACCACATCAACCAAGCCTTGGCCGAACAGAAAAAATCCCGCCGCGAGCGCACATTTGACGATT
TGCTGCTGGATGTGTTCAACGCATTGCAACCGGCCAATCCGCATGCCCAAGCCTTGGCCGAAGCCGTGGCAGCCACATGG
CAGGTTGCCTTGATTGATGAATTCCAAGACACCGACCCGCTGCAATATCAGATTTTCAGCGAGATTTTTATCCGCCAAAA
CAAGCCTTTGTTTTTGGTCGGCGACCCGAAGCAGGCGATTTACAGCTTTCGCGGTGCCGACATTTATGCCTATCTGCAAG
CGGCGGAAGATGCGCAGCAGCATTACACGCTGGCGACCAATTTCCGCAGCCATGCCAAACTGATTAACGGCATCGGTGCG
CTGTTTCAATGCAAAAACCGCCCGTTTGTATTGGAAAACATTGATTACAATCCGGTTGGTGCGGCGCGTGAAGAAAGCCG
CTTGTCGCCGAGTCGCCCTGCTGTTCAGGTTCGTTGGTTGCACGGCAATGAAACCGAGCCGCTAAACAAAGATGTCTTAC
GCAAACGTGCCGCCGAATATTGCGCCGATGAAATCGCTTTTGCCTTAAATGAAGCGGCGGAAGGCCGTCTGAATTTCAAA
GAGCGGCCGCTGGAATCGGGCGACATTGCCGTATTGGTACGCACCCACAACGAAGGCAGCATGATTGCCCAAGCCCTGAA
ATCGCGTCGCATTCAAAGCGTATTGCTGCACCGTGAATCCGTGTTCGAATCGCCCGAAGCACAAGGATTGGCGGCTTTAT
TGGATTTCTGGCTCAATCCGCGCCGCACCGAATCGCTGCGTTTTGCCTTAAGCGGTGTACTGTTCGGCTACGATGCCGAT
GCACTTTACGCGCTCAACCAAAGCGAAGCCGGCCTGTTGGCGTGGATTGATTCAGCAGAACGCGCCGCCCAGCTATGGCA
GCAAAAAGGCATTTACACCACCATGCAGCATTTTTCCGCCGAACACGGCATCGAAATCCGCCTGCTTTCAGACGGCAACG
GCCGCAGCCTGACCAATTATCATCAACTGCTGGAACGATTATCCGAAGAAAACGAGCAAAGCCACAGCCCGGCATCGCTG
CATCAATGGCTGCTGGCGCAAATCAATCTGGCCGAAAACGGTAAGGCCGGCGACAACAATGTCTTGCGTTTGGAAAGCGA
CGAAGCCTTGGTCAAAATCGTCACCATGCACGCGGCCAAAGGCTTGCAATATCCTCTGGTGTATTGCCCGTTTGTGTGGG
ACGCGCAAGACAATAAAGCGCACGATTGGCAGATTCTGCACCGCGATGGCGGCGAAAGCGAATTGCTGGCCGAACATCAG
CTTGATGACGACGACCATACCCAATTGGCCGATGAAGAAATGGCCGAACGCCTGCGCCTGCTTTATGTTGCCCTCACCCG
CGCCGAAGAACAATTGAGTATCTACGCTGCCTACTGCCAAGATACCGACGACAATACTTTCGCCTACCTGCTCGAAGGCC
ATGCCGACAGCACGCGTGAAGCCGTCAAAGCTGCTTATGAAGGCGAGCGCAAGGCCGGAAAAGGCGCAGCAGAAATGGCC
ATGTTGAAAAACAATTGGGCAAGATTCATCAACAAGCAAGCCGAAAACGAAAATACCGACTTTGTATTCACGGAAGATAC
ACCTCCATCAGCCGCATATCATTCTGCTAAACAAACCGAAGTGCAATATCAAGCCGCCGATATTCCGCCGCGCGGATTTG
AATACATCCGCCATACCAGCTTTACCGGTTTGAGCCGCCACGTCAAAGCGCACGACAGCGAACGCGAAGAATTACAACCG
AGCTTGGATGCCGCAGAAAGCCACATCAGGCCGTCTGAAAACGTGGTTGAAAAAATCGACCATGACGAATTGAGCATTCA
CCATTTCCCGCGCGGCACCAATGCCGGCTTGTGTCTGCACGATATGCTGGAAAACCTTGATTTCCAACGCTCTGCCGCCG
AACAAAGCGAGCAGATTTTGGAAACCTTAACCCGCCACGGCTTTGAAGAAAAATGGCTGCCTGCTGTGATGACCATGCTG
GATTGTTGCCGTGAAACGCCGATTTCAGGCAAAGATACCTTATCGGACATTCAGCCGAGCGAGCGTTTACCCGAAATGGG
CTTCACTCTGTATATGCAGGATTTCAACCTAGCCGCATTACGCGCATGGTTTGCCCAGCCGCATTTAGGTTTGCCGCCGG
AATGCATCGAAGCGGCGCAAAGGCTGGATTTTCAAGATGTACAAGGCTATCTAAACGGCTTTATCGACATGACCTGCATC
GCTTCAGACGGCCAAGTCTGCGTGATTGACTACAAATCCAATTACTTGGGTGCCAACGCAGCAGCCTATACCCCGCAAGC
CATGAACGAAGCCATGGGCGAACATCATTACTACCTGCAAGCCCTGATTTACGCCATTGCCGTCGGCCGCTATTTCAAAC
TGCGCGGCCTTGCTTTGCCACAAATTGCCGTGCGCTATCTGTTTTTACGCGGCATGAACGGCACGGAAAATGGCATTTGG
TCGTGGGATATTGATGCGGAAGATTTGGCAGATTGGGTGTAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(996-1191)

UvrD-like helicase C-terminal domain (UvrD_C)

(462-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

59.588

100

0.597

Multiple sequence alignment