Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   GJV52_RS09825 Genome accession   NZ_CP046027
Coordinates   1965633..1967864 (+) Length   743 a.a.
NCBI ID   WP_100563891.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1960633..1972864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS09810 (GJV52_09810) - 1961653..1961871 (+) 219 WP_095501662.1 DNA modification system-associated small protein -
  GJV52_RS09815 (GJV52_09815) - 1961875..1963920 (+) 2046 WP_100563889.1 AAA family ATPase -
  GJV52_RS09820 (GJV52_09820) - 1963951..1965522 (+) 1572 WP_095501660.1 FtsK/SpoIIIE domain-containing protein -
  GJV52_RS09825 (GJV52_09825) comA 1965633..1967864 (+) 2232 WP_100563891.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GJV52_RS09830 (GJV52_09830) - 1968484..1969854 (-) 1371 WP_095503111.1 FAD-binding oxidoreductase -
  GJV52_RS09835 (GJV52_09835) - 1970014..1970307 (-) 294 WP_095503106.1 hypothetical protein -
  GJV52_RS09840 (GJV52_09840) - 1970826..1971305 (+) 480 WP_100563893.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81501.18 Da        Isoelectric Point: 9.7937

>NTDB_id=400327 GJV52_RS09825 WP_100563891.1 1965633..1967864(+) (comA) [Neisseria brasiliensis strain N.177.16]
MLRYVLPCWAFGVLVSFLLPVVPPLWAWLAAFGLILLAAWRWKPAAVLLCMLLGMAYGVWRTESALARQWPVARVENVAL
TVVVDDLPRRDERRVQFAAKAWDKDGGEYRLMLSDYQLRDWPVGSRWQVSARVRPVVGEVNLRGLNREAWALANGVGGMG
SLGKGRVLLAESGGLNLTLWRERISRNWQQANLYGHEFSDGIGLMRALGIGEQSALRAELWQAFRPLGLTHLVSISGLHV
TMVAVWFGFLVKLLLRVLPVVPKRPRLWVLTGGVLGALLYAGLAGFGVPTQRSVLMLAAFAYAWWRGSGSSPWTGWWQAL
ALVLLFDPLAALGVGLWLSFGLVAALIWSSAGRLNERGWWLAVRGQWAATLLSVVLLGYMFASLPLLSPLVNVVAIPWFS
WVLTPLALLSSALPFAPLQWLAAALAEYTLRFLVWLAAYSPEFAVAAAPWPLMVLAVLAALVLLLPRGTALKPWACLVLV
GFVFYRVQPLSEGRLKVWVWDAGQGLSVLMQTREHRLLFDTGTAHAAGAGIVPSLNALGIRRLDKLVLSHHDIDHDGGYA
AIQRGQPPEKLLAGQPEFYPQAEFCDESQWMWDGVAFEFLRPSEAHSGKDDNDKSCVLRVLADGKALLITGDMGQKGELD
LVQKYGDALYSQILVLGHHGSNTASASAFLNAVSPQYAIASSGYANSYGHPTKAVQNKVAAHGATLLRTDLSGALVFELG
GGAEVFQGRLKQGKFYWQKKPFD

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=400327 GJV52_RS09825 WP_100563891.1 1965633..1967864(+) (comA) [Neisseria brasiliensis strain N.177.16]
ATGTTGCGTTATGTATTGCCGTGCTGGGCATTCGGGGTATTGGTGTCGTTCCTGTTGCCTGTGGTGCCGCCGTTGTGGGC
GTGGCTTGCGGCGTTTGGATTGATTTTATTGGCAGCTTGGCGTTGGAAACCGGCGGCGGTGTTGTTGTGTATGTTGCTTG
GCATGGCTTATGGGGTGTGGCGTACGGAATCGGCATTGGCGCGGCAATGGCCGGTGGCGCGGGTGGAGAATGTGGCGTTG
ACGGTGGTGGTGGACGATTTGCCGCGCCGTGATGAGCGGCGGGTGCAGTTTGCGGCCAAGGCTTGGGATAAGGATGGCGG
TGAGTATCGCTTGATGTTGTCGGATTATCAGCTGCGTGATTGGCCGGTGGGCAGCCGTTGGCAGGTATCGGCGCGGGTGC
GGCCGGTGGTGGGGGAAGTGAATTTGCGCGGGCTCAATCGTGAGGCTTGGGCATTGGCCAATGGTGTGGGTGGCATGGGT
TCGTTGGGTAAGGGCAGGGTGTTGCTGGCGGAGTCGGGCGGCCTAAATTTGACATTGTGGCGTGAACGCATCAGCCGCAA
TTGGCAGCAGGCGAATCTTTATGGACACGAGTTTTCAGACGGCATCGGCTTGATGCGGGCATTGGGGATTGGCGAACAAT
CGGCATTGCGTGCGGAATTGTGGCAGGCGTTTCGGCCTTTGGGTTTGACGCATTTGGTGAGCATTTCGGGGCTGCATGTG
ACGATGGTGGCGGTGTGGTTTGGTTTTTTGGTGAAACTGTTGCTGCGGGTGCTGCCTGTGGTGCCGAAGCGGCCGAGATT
GTGGGTGTTGACGGGCGGTGTGCTGGGGGCGTTGCTGTATGCGGGGTTGGCGGGTTTTGGCGTGCCGACGCAGCGCAGTG
TGTTGATGTTGGCGGCGTTTGCTTATGCGTGGTGGCGCGGCAGCGGTTCATCGCCGTGGACGGGCTGGTGGCAGGCTTTG
GCGCTGGTGTTGCTGTTTGATCCTTTGGCGGCATTGGGCGTGGGGTTGTGGTTGTCGTTCGGTTTGGTGGCGGCGCTGAT
TTGGTCGTCGGCAGGCCGTCTGAATGAGCGCGGCTGGTGGTTGGCCGTGCGCGGGCAATGGGCGGCGACTTTGTTGTCGG
TGGTGTTGCTGGGCTATATGTTTGCTTCGCTGCCACTGTTGAGCCCGCTGGTGAATGTGGTGGCGATTCCGTGGTTTTCT
TGGGTGTTGACACCGCTGGCTTTGCTCAGTTCGGCACTGCCGTTTGCGCCGCTGCAATGGTTGGCGGCGGCGTTGGCGGA
ATACACGCTGCGGTTTTTGGTGTGGCTGGCAGCGTATTCGCCTGAATTTGCGGTGGCGGCTGCACCTTGGCCGCTGATGG
TGTTGGCGGTTTTGGCGGCATTGGTTTTACTGCTGCCACGTGGTACGGCTTTGAAACCGTGGGCTTGCTTGGTGCTGGTT
GGATTTGTGTTTTACCGTGTGCAACCTTTGTCGGAAGGCCGTCTGAAAGTGTGGGTGTGGGATGCGGGGCAGGGTTTGTC
GGTATTGATGCAAACGCGCGAACACCGTTTGCTGTTCGATACCGGCACGGCGCATGCGGCGGGTGCGGGCATTGTGCCGA
GCTTGAATGCGCTGGGCATTCGGCGGCTGGATAAACTGGTGTTGTCGCATCACGACATCGATCACGACGGCGGCTATGCG
GCCATTCAGCGCGGCCAACCGCCAGAAAAGCTGCTGGCCGGTCAGCCTGAATTTTATCCGCAGGCCGAGTTTTGCGATGA
ATCGCAATGGATGTGGGACGGTGTGGCCTTTGAATTTTTAAGGCCGTCTGAAGCGCATTCGGGTAAGGATGACAATGATA
AGAGCTGTGTGCTGCGCGTGTTGGCCGACGGGAAGGCGCTGCTGATTACCGGCGATATGGGGCAGAAGGGCGAGCTGGAT
TTGGTGCAAAAATACGGTGATGCGTTGTATAGCCAAATATTGGTGTTAGGGCATCACGGCAGCAATACCGCCAGCGCGAG
TGCATTTTTGAATGCGGTGTCACCGCAATATGCCATAGCTTCAAGCGGTTATGCGAATAGTTACGGCCATCCGACTAAGG
CGGTGCAAAACAAAGTTGCGGCGCATGGGGCGACATTGTTGCGTACGGATTTATCGGGTGCACTGGTATTCGAATTGGGC
GGTGGGGCGGAAGTTTTTCAAGGCCGTCTGAAACAAGGAAAGTTTTATTGGCAGAAAAAGCCATTTGATTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(501-679)

Competence protein (Competence)

(209-465)

Domain of unknown function (DUF4131) (DUF4131)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

67.611

99.731

0.674
  comA Pseudomonas stutzeri DSM 10701

36.216

99.596

0.361

Multiple sequence alignment