Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   GJV52_RS04635 Genome accession   NZ_CP046027
Coordinates   917856..918563 (+) Length   235 a.a.
NCBI ID   WP_100563665.1    Uniprot ID   -
Organism   Neisseria brasiliensis strain N.177.16     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 912856..923563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV52_RS04615 (GJV52_04615) - 913928..914533 (+) 606 WP_095501732.1 trimeric intracellular cation channel family protein -
  GJV52_RS04620 (GJV52_04620) trpC 914599..915381 (+) 783 WP_100563667.1 indole-3-glycerol phosphate synthase TrpC -
  GJV52_RS04625 (GJV52_04625) - 915447..915746 (+) 300 WP_095501734.1 monooxygenase -
  GJV52_RS04630 (GJV52_04630) murJ 916028..917566 (-) 1539 WP_095501737.1 murein biosynthesis integral membrane protein MurJ -
  GJV52_RS04635 (GJV52_04635) dsbA1 917856..918563 (+) 708 WP_100563665.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  GJV52_RS04640 (GJV52_04640) - 918851..921952 (-) 3102 WP_100563663.1 efflux RND transporter permease subunit -
  GJV52_RS04645 (GJV52_04645) - 922089..923060 (-) 972 WP_100563661.1 glycosyltransferase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 25420.03 Da        Isoelectric Point: 4.9336

>NTDB_id=400313 GJV52_RS04635 WP_100563665.1 917856..918563(+) (dsbA1) [Neisseria brasiliensis strain N.177.16]
MNLKKITLTTFTALALAACGGQAETSVPAEGTAQNTASAPAPVAPVGLVEGQNYTVLANPIPQLQAGKVEVVEFFGYFCP
HCAHLEPVLSEHAKSFQEDTYLRKEHVVWGPEVKPLARLAAAVQIAGEKAADMPIFNAIVNDKINLADVNVLKTWLPEQT
TFDGKKVLAAFESPESQARADKMEELTNTFQISSTPVVIVGGKYQVKFQDWQSGMNTVDLLVDKVREEQKAAPAQ

Nucleotide


Download         Length: 708 bp        

>NTDB_id=400313 GJV52_RS04635 WP_100563665.1 917856..918563(+) (dsbA1) [Neisseria brasiliensis strain N.177.16]
ATGAACCTGAAAAAAATTACCCTCACCACATTCACGGCTCTGGCCTTGGCAGCTTGCGGCGGCCAAGCCGAAACCAGCGT
ACCTGCTGAAGGCACTGCGCAAAACACCGCTTCCGCACCGGCACCGGTTGCCCCTGTCGGCTTGGTAGAAGGCCAAAACT
ACACCGTATTGGCCAATCCGATTCCGCAATTACAAGCCGGCAAAGTCGAAGTGGTCGAATTTTTCGGCTATTTCTGCCCA
CATTGCGCCCACTTGGAACCAGTCTTGAGCGAACACGCCAAATCATTCCAAGAAGATACCTACCTGCGTAAAGAACACGT
GGTTTGGGGTCCTGAAGTAAAACCTTTGGCGCGCTTGGCCGCTGCCGTGCAAATCGCCGGTGAAAAAGCCGCCGATATGC
CGATTTTCAACGCCATCGTCAACGACAAAATCAACTTGGCCGATGTGAATGTGTTGAAAACCTGGCTGCCGGAACAAACC
ACGTTCGACGGCAAAAAAGTCTTGGCCGCATTCGAATCGCCTGAAAGCCAAGCCCGCGCTGATAAAATGGAAGAGCTGAC
CAACACCTTCCAAATCAGCAGCACGCCGGTGGTGATTGTCGGCGGCAAATACCAAGTGAAGTTTCAAGATTGGCAATCGG
GTATGAATACCGTTGATTTGCTGGTGGACAAAGTCCGCGAAGAACAAAAAGCCGCGCCTGCGCAATAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(68-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

66.809

100

0.668
  dsbA2 Neisseria meningitidis MC58

71.362

90.638

0.647

Multiple sequence alignment