Detailed information NTG0400263

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: F7R28_RS06660
• Genome accession: NZ_CP046023
• Coordinates: 1420601..1422055 (-)
• Length: 484 a.a.
• NCBI ID: WP_122954023.1
• Uniprot ID: -
• Organism: Polaromonas sp. Pch-P
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1415601..1427055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7R28_RS06650 (F7R28_06690)	-	1416655..1419564 (-)	2910	WP_122954025.1	ribonucleoside-diphosphate reductase subunit alpha	-
F7R28_RS06655 (F7R28_06695)	ampD	1420012..1420614 (-)	603	WP_122954024.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
F7R28_RS06660 (F7R28_06700)	pilR	1420601..1422055 (-)	1455	WP_122954023.1	sigma-54 dependent transcriptional regulator	Regulator
F7R28_RS06665 (F7R28_06705)	-	1422055..1423773 (-)	1719	WP_122954022.1	ATP-binding protein	-
F7R28_RS06670 (F7R28_06710)	-	1423770..1424021 (-)	252	WP_122954021.1	PP0621 family protein	-
F7R28_RS06675 (F7R28_06715)	-	1424018..1424818 (-)	801	WP_122954020.1	inner membrane protein YpjD	-
F7R28_RS06680 (F7R28_06720)	ffh	1424919..1426277 (+)	1359	WP_122954019.1	signal recognition particle protein	-

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 52388.62 Da
• Isoelectric Point: 5.2713

>NTDB_id=400263 F7R28_RS06660 WP_122954023.1 1420601..1422055(-) (pilR) [Polaromonas sp. Pch-P]
MSTQAPAAQQARILVIDDEPDLRTLYELTLLREGYRVEAAGDLQQARQQLSENRFDAVITDMRLPDGLGLELLRDLVTQQ
RPERCVVITAHGSAENAVEALKAGAFDYLTKPVDLKQFRSVVASAVQGARQPAAAAKAERNGAEPGIAPLAIPLPVAADA
PLILQKLVGESAVMRAVKSRIVKVAGSMAPVLIQGESGTGKELVARAVHGCSHRAAGPFVAVNCSAIPENLLEAEFFGAR
KGAYTGSAQDRQGYFQAAKGGTLFLDEIGDLPLAMQSKLLRAIQERTVRPLGSPHEDAVDVRIVSATHKDLSAGVEQGTF
RQDLYYRLNVIEILVPALRERREDLPALCKALLSRICQESGFGMPELTDAVMEQLRARPFNGNVRELENTLHRAVALGDG
SELHFDAPAEEHVSVPENLQDYLDGQERNILTKVLLETGFNRTAAASRLGLTLRQIRYRIARLNIVTPGSDDPADGLDPA
DDPA

Nucleotide

• Length: 1455 bp

>NTDB_id=400263 F7R28_RS06660 WP_122954023.1 1420601..1422055(-) (pilR) [Polaromonas sp. Pch-P]
ATGAGCACGCAAGCCCCCGCCGCCCAGCAAGCCCGCATCCTCGTCATTGACGACGAGCCGGACCTGCGCACCCTCTACGA
GCTGACGCTGCTCAGGGAAGGCTATCGGGTGGAAGCTGCCGGCGACCTGCAGCAGGCCCGCCAGCAACTGAGTGAAAACC
GCTTCGACGCGGTCATCACCGACATGCGCCTGCCGGACGGCCTGGGCCTCGAATTGCTGCGCGACCTGGTGACCCAGCAG
CGGCCGGAGCGCTGCGTGGTCATCACGGCGCACGGTTCTGCCGAAAATGCGGTCGAAGCGCTGAAGGCCGGCGCTTTTGA
CTACCTCACCAAGCCGGTCGACCTCAAACAGTTTCGCAGCGTCGTCGCCTCGGCCGTGCAGGGCGCGCGGCAGCCCGCTG
CTGCCGCCAAGGCCGAACGCAATGGCGCGGAACCGGGTATCGCCCCCCTCGCGATCCCGCTGCCCGTAGCCGCCGATGCG
CCTTTGATACTGCAAAAACTGGTCGGTGAATCGGCCGTCATGCGCGCCGTGAAATCGCGCATCGTCAAGGTGGCGGGCAG
CATGGCGCCGGTTTTGATCCAGGGAGAATCGGGCACCGGCAAGGAACTGGTCGCGCGAGCGGTGCACGGCTGCAGCCACC
GGGCGGCAGGCCCTTTTGTGGCAGTCAACTGCAGCGCCATCCCCGAGAACCTTCTCGAAGCGGAGTTCTTCGGCGCGCGC
AAAGGGGCGTACACCGGATCGGCACAGGACCGGCAGGGCTACTTCCAGGCGGCCAAAGGCGGCACCCTGTTTCTCGATGA
GATCGGCGACCTGCCGCTGGCCATGCAATCCAAGCTGTTGCGGGCCATCCAGGAGCGAACGGTGCGCCCGCTGGGCTCCC
CGCACGAAGATGCCGTCGATGTGCGCATCGTCAGCGCCACCCACAAGGACCTGTCCGCCGGCGTAGAGCAAGGCACCTTC
CGCCAGGACCTGTATTACCGGCTCAACGTGATCGAGATTCTTGTGCCCGCCCTGCGCGAGCGCCGGGAAGACCTGCCCGC
TCTGTGCAAGGCACTGCTTTCAAGAATCTGCCAGGAGTCCGGCTTCGGCATGCCCGAGCTGACGGACGCCGTGATGGAAC
AACTGCGCGCGCGGCCCTTCAACGGCAATGTGCGGGAGCTTGAAAACACCCTGCACCGGGCGGTGGCGCTCGGCGACGGC
AGCGAGCTTCACTTCGATGCGCCGGCGGAAGAGCACGTCTCGGTTCCCGAGAACCTGCAGGATTACCTGGACGGGCAGGA
AAGAAACATTCTTACCAAGGTATTGCTGGAAACCGGCTTTAACCGCACCGCCGCAGCCAGCCGGCTGGGCCTGACGCTTC
GCCAGATCCGCTACCGGATTGCCCGCCTGAACATCGTGACGCCGGGCAGCGACGACCCCGCCGACGGACTCGACCCTGCC
GATGACCCCGCCTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (167-333)

• Response regulator receiver domain (Response_reg) (13-122)

• Bacterial regulatory protein, Fis family (HTH_8) (427-462)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50	96.281	0.481
pilR	Acinetobacter baumannii strain A118	40.816	100	0.413