Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FOC72_RS06835 Genome accession   NZ_CP054570
Coordinates   1439908..1440504 (-) Length   198 a.a.
NCBI ID   WP_002896112.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1434908..1445504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS06810 (FOC72_06810) - 1435097..1435783 (-) 687 WP_002896107.1 TIGR02206 family membrane protein -
  FOC72_RS06815 (FOC72_06815) - 1435802..1436488 (-) 687 WP_002896108.1 TIGR02206 family membrane protein -
  FOC72_RS06820 (FOC72_06820) - 1436596..1437207 (-) 612 WP_002896109.1 NUDIX hydrolase N-terminal domain-containing protein -
  FOC72_RS06825 (FOC72_06825) murF 1437197..1438567 (-) 1371 WP_002896110.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  FOC72_RS06830 (FOC72_06830) - 1438643..1439689 (-) 1047 WP_032914220.1 D-alanine--D-alanine ligase -
  FOC72_RS06835 (FOC72_06835) recR 1439908..1440504 (-) 597 WP_002896112.1 recombination mediator RecR Machinery gene
  FOC72_RS06840 (FOC72_06840) pbp2b 1440608..1442674 (-) 2067 WP_002896113.1 penicillin-binding protein PBP2B -
  FOC72_RS06845 (FOC72_06845) - 1442884..1443576 (-) 693 WP_002896114.1 phosphoglycerate mutase -
  FOC72_RS06850 (FOC72_06850) - 1443726..1444466 (-) 741 WP_002896116.1 hypothetical protein -
  FOC72_RS06855 (FOC72_06855) - 1444934..1445377 (-) 444 WP_002896119.1 Fur family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21614.59 Da        Isoelectric Point: 4.3499

>NTDB_id=400172 FOC72_RS06835 WP_002896112.1 1439908..1440504(-) (recR) [Streptococcus sanguinis strain FDAARGOS_770]
MLYPTPIANLIDSFSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLAAKRELSYCSVCGNLTDEDPCAICQDQSRDQS
TILIVEDSRDVSAMENIQEYHGLYHVLHGLISPMNGVGPDDINLKSLITRLMDSEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLIRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=400172 FOC72_RS06835 WP_002896112.1 1439908..1440504(-) (recR) [Streptococcus sanguinis strain FDAARGOS_770]
ATGCTTTACCCAACCCCTATTGCCAATCTGATTGACAGTTTTTCAAAACTGCCCGGCATTGGCATCAAAACAGCCACTCG
ACTGGCTTTTTACACTATTGGCATGAGCGATGACGATGTCAATGAATTTGCTAAGAATCTGCTGGCAGCTAAGCGTGAGC
TGAGCTACTGCTCTGTTTGCGGCAACTTGACGGACGAAGACCCTTGTGCTATCTGTCAAGACCAGTCGCGCGATCAATCG
ACTATTTTGATCGTTGAGGACAGCCGAGATGTGTCAGCCATGGAAAATATCCAGGAATACCACGGACTTTATCATGTCTT
GCACGGCTTGATTTCACCTATGAACGGCGTTGGACCGGACGACATCAATCTCAAGAGTCTGATTACTCGTCTGATGGATA
GTGAAGTGACGGAGGTTATCGTCGCGACCAATGCGACTGCGGATGGCGAAGCGACCTCCATGTACATCTCACGGGTTCTG
AAGCCCGCTGGGATTAAGGTGACTCGGCTAGCGCGTGGTTTGGCGGTTGGCTCCGACATTGAATATGCGGACGAGGTTAC
ATTGATTCGCGCTATCGAAAATCGGACGGAATTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment