Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   FOC72_RS03410 Genome accession   NZ_CP054570
Coordinates   693469..697143 (+) Length   1224 a.a.
NCBI ID   WP_002895126.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 688469..702143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS03395 (FOC72_03395) - 688786..689631 (+) 846 WP_002895121.1 DUF4300 family protein -
  FOC72_RS03400 (FOC72_03400) - 689678..689989 (+) 312 WP_002895124.1 hypothetical protein -
  FOC72_RS03405 (FOC72_03405) rexB 690191..693472 (+) 3282 WP_002895125.1 ATP-dependent nuclease subunit B Machinery gene
  FOC72_RS03410 (FOC72_03410) rexA 693469..697143 (+) 3675 WP_002895126.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FOC72_RS03415 (FOC72_03415) - 697177..697482 (+) 306 WP_002895127.1 DUF4298 domain-containing protein -
  FOC72_RS03420 (FOC72_03420) hisC 697955..699013 (+) 1059 WP_002895128.1 histidinol-phosphate transaminase -
  FOC72_RS03425 (FOC72_03425) - 699069..700058 (+) 990 WP_002895130.1 ATP phosphoribosyltransferase regulatory subunit -
  FOC72_RS03430 (FOC72_03430) hisG 700055..700699 (+) 645 WP_002895131.1 ATP phosphoribosyltransferase -
  FOC72_RS03435 (FOC72_03435) hisD 700696..701988 (+) 1293 WP_002895133.1 histidinol dehydrogenase -

Sequence

Protein


Download         Length: 1224 a.a.        Molecular weight: 140010.65 Da        Isoelectric Point: 4.9048

>NTDB_id=400145 FOC72_RS03410 WP_002895126.1 693469..697143(+) (rexA) [Streptococcus sanguinis strain FDAARGOS_770]
MKRIPFLTAEEIALKQAQEAASDKPQKKTAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDKILRGVAVSQLFISTFT
VKAAGELKERLEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAFTQKVLSRYGYLLGLAPNFRILQSASEQLILQ
NEVFSQVFDRYYNSERQDLFSRLVKNFTGKRKDLSGFREQVYRIYSFLQSTSSPQRWLKETFLYGYEHSDFEAERERIFG
QIKSALLELEAFFSAHMEHEGREFAGAKYQENVQDALTLLAGLNELSSIEETAQILKQIVALSQLSNGQVFTARVGKNAD
ELKKEMAKDYNEARKPMIERLRSFDQQLYQLDFIEQHQDECLPLVELLRDFVADFAQAYLERKKVENAFEFGDISHFAIE
ILETFPEVRRFYQERYHEVMVDEYQDTNHTQERMLDLLARGQNRFMVGDIKQSIYRFRQADPQIFSDKFKAYQEDSSQGK
LIVLKENFRSHLEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPVKREPNLANRASFLIYEGSKESPEEEADEGLPQA
VSAGEVDLVIKEIIRLHNEEGVAFKDITLLTASRTRNDLILAAFEQHQIPLVPDDGAANYLQSVEVLVMLDTLRTINNPL
NDYALTALLKSPMFDFGEDELARLSLQASQERSQENLYEKLLNVLQGRGLNPALVTQELQKKLQHFHETLQGWRTYSKTH
SLYDLIWKIYQDRFYYDMVGTLTNGAQRQANLYALSLRANEYEKSSFKGLSRFIGMIDRILENQHDLASVPVAVPKDAVR
LMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRTKGVGIKYVADVSVSVEDPYAPNQLRISMDTLPYQQNLAELQL
ASLSEQMRLLYVAMTRAETKLYLVGKGSQEALDKRQWGKSQQGRLSASLRSQLSNFQDWLYAIQAVFSDENLAYETRFVT
DEELTAEEIGQINEPVLFPADDLANNRQTDDIRRALDILESVDQLNSQYRSAIELPSVRTPSQIKKFYEPIMDMDGLDIM
DERAAFRPQPSFELPDFGKKAKVTGAQVGSAVHELMQRIPLDSRPSMAVLRSALAQVQADEAVKNQIQLPKIASFFETDL
GRLLIENSDRVRREAPFAMLKQDEDSGQEFVLRGILDGYLLFEDRIILFDYKTDKYKDSSELIARYHGQLDLYAQALSRS
YGISQIEKYLILLGGEQLQVVKVD

Nucleotide


Download         Length: 3675 bp        

>NTDB_id=400145 FOC72_RS03410 WP_002895126.1 693469..697143(+) (rexA) [Streptococcus sanguinis strain FDAARGOS_770]
ATGAAGAGAATTCCTTTTTTAACTGCGGAAGAGATTGCTCTTAAGCAAGCCCAAGAAGCTGCTTCGGACAAGCCACAGAA
AAAGACGGCAGAGCAGATTGAGGCCATCTACTCCTCTGGCCAGAATATTCTAGTCTCCGCATCGGCCGGCTCGGGTAAGA
CTTTTGTCATGGTCCAACGAATCATAGACAAGATTCTTCGAGGTGTTGCTGTCAGTCAGCTCTTTATCTCGACCTTTACT
GTCAAGGCGGCAGGAGAGCTCAAAGAGAGGCTGGAGAAGGAACTGGGTCAGGCCTTGAAGGAGGCTGAAAGTCCTGAACT
CAAGCAACATTTGGCCCAGCAATTGGCTGATCTGCCCAATGCTGACATTGGCACCATGGACGCCTTTACCCAGAAAGTAC
TTAGTCGCTATGGTTACCTGCTTGGTTTAGCACCGAATTTTCGGATTCTCCAGTCTGCCAGTGAGCAGCTGATTCTGCAA
AATGAAGTCTTTAGCCAAGTATTTGATCGTTACTATAACAGCGAGCGTCAGGATTTGTTTAGCCGTTTGGTTAAGAATTT
TACTGGTAAGCGCAAGGATTTATCAGGCTTCCGGGAGCAAGTTTATCGGATTTACAGCTTTCTGCAGTCAACCAGCAGTC
CTCAGCGCTGGCTGAAGGAAACCTTCCTTTATGGCTATGAGCACAGCGACTTTGAAGCAGAGAGAGAGCGGATATTTGGT
CAAATCAAATCAGCTCTTTTGGAACTGGAAGCTTTCTTTTCTGCCCATATGGAGCATGAGGGGAGAGAATTTGCAGGTGC
TAAATATCAGGAAAATGTCCAAGATGCTCTGACCCTCTTAGCAGGCCTGAATGAACTGTCCTCAATAGAGGAAACAGCTC
AAATTCTCAAACAGATCGTGGCACTTTCTCAACTGTCCAATGGCCAGGTCTTTACAGCTCGGGTTGGCAAGAATGCAGAC
GAGCTCAAAAAAGAAATGGCCAAGGACTACAATGAAGCCAGGAAGCCTATGATTGAGCGGTTGCGCAGTTTTGACCAGCA
GCTTTATCAACTGGACTTTATCGAGCAGCATCAGGATGAGTGTCTGCCTCTGGTTGAGCTTCTGCGGGATTTTGTGGCGG
ACTTTGCACAGGCTTACTTGGAGCGTAAGAAAGTAGAAAATGCCTTTGAATTTGGTGATATCAGCCATTTTGCTATTGAG
ATTTTAGAGACTTTTCCAGAGGTACGTCGCTTTTATCAGGAGCGCTACCACGAGGTCATGGTGGATGAGTATCAGGATAC
CAACCACACGCAGGAGCGCATGCTGGATTTGCTTGCCAGAGGGCAAAATCGCTTTATGGTGGGTGATATCAAGCAGTCTA
TCTATCGTTTCCGTCAAGCGGATCCGCAGATTTTCAGTGATAAGTTTAAGGCCTATCAAGAGGATAGCAGTCAGGGCAAG
CTGATTGTCCTCAAGGAAAATTTCCGTAGTCATCTTGAGGTACTGGAAGCGACCAATGATGTTTTCAAACGCCTGATGGA
TGAAGAAGTCGGGGAAATTGACTACAATGAAACCCACTATCTGGTGGCTGGAAATCCTGTCAAACGCGAGCCTAATCTAG
CTAACCGCGCTTCTTTCTTAATCTATGAAGGCTCTAAGGAGAGTCCGGAAGAGGAGGCTGATGAGGGCTTGCCACAGGCA
GTATCAGCTGGGGAAGTGGACCTAGTCATCAAGGAAATCATTCGCTTGCACAATGAAGAAGGAGTGGCTTTTAAAGATAT
TACGCTGCTGACGGCTTCCAGAACCCGCAATGATTTGATTTTAGCTGCCTTTGAGCAGCACCAGATTCCGCTGGTACCAG
ATGATGGCGCCGCAAACTATCTGCAGTCAGTAGAGGTCTTAGTCATGCTGGATACCCTGCGGACCATCAATAATCCGCTG
AATGACTATGCCCTGACCGCCCTTCTCAAGTCTCCTATGTTTGACTTTGGTGAGGACGAGCTGGCTCGGCTGTCCCTGCA
GGCCAGTCAAGAGCGTTCTCAGGAAAATCTCTATGAAAAATTGCTCAATGTCCTCCAAGGAAGAGGTTTGAACCCTGCTT
TAGTCACCCAGGAACTGCAGAAAAAGCTGCAGCACTTCCATGAGACCCTGCAAGGCTGGCGAACCTATTCCAAGACGCAT
TCGCTGTATGATTTGATTTGGAAGATTTACCAGGACCGTTTCTACTATGACATGGTGGGGACTCTGACCAATGGTGCCCA
GAGACAGGCCAATCTCTATGCTCTTTCTTTGCGGGCCAATGAGTATGAAAAGTCCAGCTTTAAAGGCCTGTCTCGCTTTA
TCGGGATGATAGATCGTATCTTGGAAAACCAGCATGACCTAGCCAGTGTGCCAGTGGCGGTGCCTAAGGACGCCGTTCGT
CTCATGACCATTCATAAGAGTAAGGGGCTGGAGTTCAAGTATGTCTTCCTGCTCAATATGGACAAGGCCTTCAACCGTCA
GGATAGCAGCTCGGCTATTATCCTCAGCCGGACCAAAGGAGTCGGCATCAAGTATGTGGCGGATGTATCGGTGTCTGTGG
AAGATCCTTATGCGCCGAATCAGCTGCGCATTTCCATGGATACGCTGCCTTATCAGCAGAATTTAGCAGAGCTGCAGTTG
GCCAGTCTGTCTGAGCAGATGCGTTTGCTTTATGTGGCCATGACGCGGGCTGAAACCAAGCTTTATCTGGTCGGCAAGGG
CAGTCAAGAGGCCTTGGATAAGCGTCAGTGGGGCAAGAGCCAACAAGGGCGTTTGTCTGCCAGTCTGCGCAGCCAACTCA
GTAATTTCCAAGACTGGCTCTATGCCATTCAGGCTGTTTTTTCCGATGAGAATCTTGCCTACGAGACCCGTTTTGTCACT
GATGAGGAGCTAACTGCTGAAGAGATAGGGCAGATTAATGAGCCTGTGCTCTTTCCAGCGGATGATTTGGCAAATAATCG
TCAGACGGATGATATCCGTCGGGCTCTGGATATTTTAGAAAGCGTGGACCAGCTGAATAGCCAGTATCGCTCTGCTATTG
AGTTACCTAGTGTACGAACTCCAAGCCAGATTAAGAAGTTTTATGAGCCAATCATGGATATGGATGGTCTGGATATCATG
GATGAGCGAGCAGCTTTTCGGCCGCAGCCCAGCTTTGAGTTGCCTGATTTTGGCAAGAAAGCCAAAGTGACTGGGGCTCA
AGTCGGCAGTGCCGTTCATGAACTCATGCAGCGGATTCCTTTAGATAGCAGGCCCAGCATGGCTGTACTTCGTTCTGCCT
TGGCTCAGGTTCAGGCCGATGAAGCGGTCAAAAATCAGATTCAGCTGCCTAAGATTGCATCTTTCTTCGAGACGGATTTG
GGACGCCTCTTGATTGAGAACAGTGACAGAGTTCGTCGAGAAGCACCATTTGCCATGCTCAAGCAAGATGAGGACAGCGG
TCAGGAATTTGTTTTGCGGGGTATTTTGGATGGTTACCTGCTTTTTGAGGACCGAATCATTCTCTTTGACTACAAGACGG
ATAAATACAAGGATTCGTCTGAGTTGATTGCTCGCTACCATGGCCAGCTAGACTTATATGCTCAAGCTCTCAGCCGTTCT
TATGGCATTTCGCAGATTGAAAAATATTTGATTCTGCTGGGTGGTGAGCAGCTGCAGGTGGTTAAGGTGGACTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1064-1200)

UvrD-like helicase C-terminal domain (UvrD_C)

(482-903)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

57.843

100

0.578