Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   FOC72_RS03405 Genome accession   NZ_CP054570
Coordinates   690191..693472 (+) Length   1093 a.a.
NCBI ID   WP_002895125.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 685191..698472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS03380 (FOC72_03380) - 685809..687566 (+) 1758 WP_032914142.1 glycoside hydrolase family 13 protein -
  FOC72_RS03385 (FOC72_03385) - 687653..688150 (+) 498 WP_002895119.1 hypothetical protein -
  FOC72_RS03390 (FOC72_03390) - 688210..688752 (+) 543 WP_002895120.1 ClbS/DfsB family four-helix bundle protein -
  FOC72_RS03395 (FOC72_03395) - 688786..689631 (+) 846 WP_002895121.1 DUF4300 family protein -
  FOC72_RS03400 (FOC72_03400) - 689678..689989 (+) 312 WP_002895124.1 hypothetical protein -
  FOC72_RS03405 (FOC72_03405) rexB 690191..693472 (+) 3282 WP_002895125.1 ATP-dependent nuclease subunit B Machinery gene
  FOC72_RS03410 (FOC72_03410) rexA 693469..697143 (+) 3675 WP_002895126.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  FOC72_RS03415 (FOC72_03415) - 697177..697482 (+) 306 WP_002895127.1 DUF4298 domain-containing protein -

Sequence

Protein


Download         Length: 1093 a.a.        Molecular weight: 124253.89 Da        Isoelectric Point: 5.0350

>NTDB_id=400144 FOC72_RS03405 WP_002895125.1 690191..693472(+) (rexB) [Streptococcus sanguinis strain FDAARGOS_770]
MKLLYTDIRHSLTKVLVAEAESLVAAGKRVFYIAPNSLSFEKERAVLECLKNKASFAITVTRFAQMARYFVLNDVRQGQS
LDDIGLGMLIYRTLTELDDGELKVYGRIKKDPQFIQQLMDLYHELQTAQMSFADLEFLEEPEKREDLVKIFTAVTAALNK
GDFDSSSQIAAFAQHILAGDTDEELENLALVIDGFTRFSAEEEYLVGLLHRKGVEIVIGTYASQKAYRAAFREGNLYQAS
VDFLRKLAEDYQVKPDYISHAEAEDAFGRISKVLESRYDFSEPAVEVSETDRSQLQIWATMNQKEELEYVAKSIRQRVHD
GVHYKDIRLLLGDVEAYQLQLKTIFDQYQIPYYLGRSESMAQHPLVQFVESLERLKRYNFQLEDLLNLLKTGLYGDLTQE
ELDHFEQYLRFADIKGAAKLAKDFTANSQGKFDLDRLNHIRRRVMTPLQDFFKSRSQTTSGLLAKFTEFVQVARLSDNLT
ALLQGESQQEQERHEEVWKAFSHVLEQFAQVFADSKVKLDDFLALVLSGMLLSNYRTVPATVDVVKVQSYDLIEPLAAPY
VYAIGLTQERFPKIAQNKSLLSDEDRARLNDATDSQAELQIASSENLKKNRYTALSLMNSATKELVLSAPALVNEVEDSM
STYLLELTAAPLSLPIIVKKPQASSDDIGSYRALLSQIIELHQEEIDREWTAEEQTFWAVAVRVLRKKLAAEGISIPHIS
KELKTESLQPETLQALYPQEQPLRLSASALNEYFRHQYAYFLKYVLRLQEEWTIHPDARSHGIFLHRIFEKVLQDDSSAD
FDRRLAQAMEETSREAEFESIYGESGQTRFARQLLLDTARATGRVLAHPSGIETIGEETGFGSASKPFLTLGNGRAVTVS
GKVDRIDRLTKTESLGVVDYKSGDIKFSFEKFFNGLNSQLPTYLAAIEELADYQEDKGTFGAMYLQMTDPIVALKDTKTL
ADAVNQSMKPLQYKGLFVADAVKELGPLYEKNKTNLLSQEDLDLLLAYNAYLYKKAAEGILSGHFAVNPYTENGRSIAPY
VEQFKAITGFEANLHLGQARQLEKLDASKFDRRPTGEKLRQAWLEKMREEMER

Nucleotide


Download         Length: 3282 bp        

>NTDB_id=400144 FOC72_RS03405 WP_002895125.1 690191..693472(+) (rexB) [Streptococcus sanguinis strain FDAARGOS_770]
ATGAAATTACTTTATACAGATATTCGCCATTCTTTGACCAAGGTTTTAGTGGCTGAGGCTGAGAGCTTGGTGGCGGCTGG
TAAGCGAGTCTTTTATATTGCGCCTAATTCGCTATCTTTTGAGAAGGAGCGGGCGGTTTTGGAGTGCCTGAAGAACAAAG
CTTCCTTTGCCATTACAGTGACGCGCTTTGCCCAGATGGCTCGATATTTTGTCCTCAATGATGTTCGGCAAGGGCAGAGT
TTGGACGATATTGGTCTGGGAATGCTGATTTATCGGACCTTGACAGAGCTGGATGATGGAGAGCTTAAAGTCTATGGCCG
TATTAAGAAGGATCCTCAGTTTATCCAGCAGCTGATGGATCTTTACCATGAACTGCAGACTGCCCAGATGTCCTTTGCGG
ATCTGGAATTTCTCGAGGAGCCTGAGAAGCGGGAGGATCTGGTCAAGATTTTTACAGCGGTGACTGCTGCTCTGAATAAG
GGCGATTTTGATTCGTCTTCTCAGATTGCTGCTTTTGCCCAGCATATTCTGGCTGGCGACACAGATGAGGAATTGGAGAA
TCTAGCTCTGGTCATTGATGGCTTTACTCGTTTTTCTGCCGAAGAGGAATACCTGGTCGGTCTCCTGCATCGAAAAGGTG
TGGAGATTGTCATCGGGACCTATGCCAGCCAAAAAGCCTATCGAGCAGCCTTTCGTGAAGGCAATCTCTATCAGGCCAGC
GTGGATTTTTTGAGAAAGCTAGCCGAGGACTATCAGGTCAAGCCTGACTATATCTCTCATGCGGAAGCGGAAGATGCCTT
TGGACGGATTTCCAAGGTCTTGGAGAGTCGTTATGATTTTTCTGAGCCGGCTGTTGAAGTTAGTGAGACAGATCGCTCAC
AGCTTCAAATTTGGGCTACTATGAACCAGAAAGAAGAGTTGGAGTATGTGGCTAAGTCCATCCGGCAGCGGGTTCATGAT
GGTGTGCACTATAAGGATATTCGTCTGCTTTTGGGAGATGTAGAAGCCTACCAGCTTCAGCTCAAGACTATTTTTGACCA
ATATCAGATTCCCTACTATCTGGGGCGGAGCGAGTCAATGGCCCAGCATCCGCTGGTCCAGTTTGTCGAGTCCTTGGAGC
GGCTCAAACGCTATAATTTTCAACTGGAAGACCTGCTCAATCTCTTAAAGACAGGGCTCTACGGCGATTTGACTCAGGAA
GAGCTGGATCATTTTGAGCAATATCTGCGCTTTGCGGACATTAAGGGAGCAGCCAAGCTAGCCAAGGATTTCACGGCCAA
TAGCCAAGGAAAATTTGACCTAGACCGTCTCAATCATATTCGTCGTCGGGTTATGACTCCATTGCAAGATTTTTTCAAAT
CCCGTAGCCAGACAACGTCGGGGCTCTTAGCTAAATTTACAGAATTTGTCCAAGTGGCCCGTTTGTCTGACAATTTGACG
GCTCTGCTGCAGGGAGAAAGTCAGCAGGAGCAGGAGCGCCATGAGGAAGTCTGGAAGGCTTTCAGCCATGTCTTAGAGCA
GTTTGCTCAGGTCTTTGCAGATAGTAAGGTCAAACTGGATGATTTTCTAGCCTTGGTCTTGTCAGGTATGCTTTTGTCCA
ACTACCGGACGGTACCGGCGACAGTAGATGTGGTCAAGGTCCAGTCTTATGACCTGATAGAGCCTTTAGCAGCTCCTTAC
GTCTACGCGATTGGACTGACCCAAGAGCGTTTCCCGAAAATCGCGCAAAACAAGAGTCTGCTTAGTGATGAAGACCGGGC
TCGGCTCAATGATGCAACGGATTCTCAGGCGGAACTCCAGATTGCCAGCTCAGAAAATCTCAAAAAGAATCGCTATACGG
CTCTGTCGCTGATGAATTCTGCTACCAAAGAGCTGGTCTTGTCTGCGCCGGCCTTGGTCAATGAAGTAGAGGACAGCATG
TCGACCTATCTGCTGGAATTGACTGCAGCTCCGCTTTCCTTGCCTATCATTGTCAAAAAGCCTCAGGCTTCCAGTGACGA
TATTGGCAGCTACCGAGCTCTACTTTCTCAAATTATCGAGCTTCACCAAGAGGAGATTGATCGAGAGTGGACAGCGGAGG
AGCAGACTTTTTGGGCGGTGGCTGTACGGGTTCTGCGCAAGAAATTGGCAGCAGAAGGCATCAGCATTCCGCACATCAGC
AAGGAACTGAAAACGGAGTCTCTACAGCCAGAAACTCTGCAAGCCCTCTACCCTCAGGAGCAGCCTCTCCGACTTTCAGC
GTCTGCTCTAAACGAATATTTTCGGCATCAGTATGCTTATTTTCTCAAGTATGTTCTGCGCCTGCAGGAAGAGTGGACCA
TTCATCCTGATGCTCGCAGCCATGGGATTTTCCTCCACCGGATCTTTGAAAAGGTTCTGCAGGATGATTCGTCGGCTGAT
TTTGACCGGCGTTTAGCACAAGCTATGGAAGAGACCAGTCGAGAGGCCGAGTTTGAGAGCATCTACGGTGAGTCAGGACA
GACCCGTTTTGCCCGCCAGCTCTTGCTAGATACGGCGAGGGCGACCGGCCGTGTGCTAGCTCATCCAAGCGGGATTGAGA
CCATTGGTGAGGAGACAGGCTTTGGTTCTGCTTCTAAGCCTTTCCTGACCTTGGGAAATGGCAGAGCAGTGACCGTGAGC
GGTAAGGTGGACCGGATTGACCGTCTGACCAAGACCGAGAGTCTGGGAGTGGTGGACTATAAGTCTGGCGATATTAAGTT
CAGCTTTGAAAAGTTCTTTAATGGACTGAATTCTCAGCTGCCAACCTATCTAGCAGCGATTGAAGAGTTAGCAGACTATC
AAGAGGATAAGGGGACTTTTGGCGCCATGTATTTGCAGATGACCGATCCGATTGTGGCGCTTAAAGATACCAAGACCTTG
GCGGATGCAGTCAATCAGTCTATGAAACCACTCCAGTACAAGGGGCTTTTTGTGGCTGATGCTGTCAAGGAGCTTGGTCC
GCTCTATGAAAAAAATAAGACCAACTTGCTGAGCCAGGAAGACTTGGACTTGCTGCTGGCCTATAATGCTTATCTCTACA
AAAAAGCTGCAGAAGGCATTCTATCAGGCCATTTTGCAGTCAATCCTTATACAGAGAATGGTCGCAGCATTGCACCTTAT
GTGGAGCAGTTTAAGGCCATTACAGGCTTTGAAGCCAATCTACACTTGGGACAGGCACGCCAATTAGAAAAGCTGGATGC
AAGCAAGTTTGATAGGCGTCCGACTGGTGAGAAGTTGCGTCAGGCCTGGCTAGAAAAGATGAGGGAGGAGATGGAAAGAT
GA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1031)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

57.429

100

0.576

Multiple sequence alignment