Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GJS30_RS02955 Genome accession   NZ_CP045993
Coordinates   572927..573364 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 567927..578364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS02930 (GJS30_02925) - 568947..570083 (+) 1137 WP_094296367.1 zinc-dependent alcohol dehydrogenase -
  GJS30_RS02935 (GJS30_02930) - 570098..570532 (+) 435 WP_014416871.1 RDD family protein -
  GJS30_RS02940 (GJS30_02935) - 570649..570927 (+) 279 WP_263612330.1 YckD family protein -
  GJS30_RS02945 (GJS30_02940) - 571031..572467 (+) 1437 WP_072177592.1 glycoside hydrolase family 1 protein -
  GJS30_RS02950 (GJS30_02945) nin/comJ 572508..572906 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  GJS30_RS02955 (GJS30_02950) nucA/comI 572927..573364 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GJS30_RS02960 (GJS30_02955) hxlB 573695..574252 (-) 558 WP_179155872.1 6-phospho-3-hexuloisomerase -
  GJS30_RS02965 (GJS30_02960) hxlA 574249..574884 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  GJS30_RS02970 (GJS30_02965) - 575116..575478 (+) 363 WP_021494206.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=400029 GJS30_RS02955 WP_003156588.1 572927..573364(-) (nucA/comI) [Bacillus velezensis strain LABIM22]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=400029 GJS30_RS02955 WP_003156588.1 572927..573364(-) (nucA/comI) [Bacillus velezensis strain LABIM22]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment