Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   GJS30_RS02950 Genome accession   NZ_CP045993
Coordinates   572508..572906 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 567508..577906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS02925 (GJS30_02920) - 567680..568882 (+) 1203 WP_021494201.1 GTP-binding protein -
  GJS30_RS02930 (GJS30_02925) - 568947..570083 (+) 1137 WP_094296367.1 zinc-dependent alcohol dehydrogenase -
  GJS30_RS02935 (GJS30_02930) - 570098..570532 (+) 435 WP_014416871.1 RDD family protein -
  GJS30_RS02940 (GJS30_02935) - 570649..570927 (+) 279 WP_263612330.1 YckD family protein -
  GJS30_RS02945 (GJS30_02940) - 571031..572467 (+) 1437 WP_072177592.1 glycoside hydrolase family 1 protein -
  GJS30_RS02950 (GJS30_02945) nin/comJ 572508..572906 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  GJS30_RS02955 (GJS30_02950) nucA/comI 572927..573364 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GJS30_RS02960 (GJS30_02955) hxlB 573695..574252 (-) 558 WP_179155872.1 6-phospho-3-hexuloisomerase -
  GJS30_RS02965 (GJS30_02960) hxlA 574249..574884 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  GJS30_RS02970 (GJS30_02965) - 575116..575478 (+) 363 WP_021494206.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=400028 GJS30_RS02950 WP_007609299.1 572508..572906(-) (nin/comJ) [Bacillus velezensis strain LABIM22]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=400028 GJS30_RS02950 WP_007609299.1 572508..572906(-) (nin/comJ) [Bacillus velezensis strain LABIM22]
TTGATTAAATCATGGAAACCGCAAGAACTAGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment