Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GJD98_RS13655 Genome accession   NZ_CP045974
Coordinates   3043384..3044043 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila strain AUSMDU00010536 isolate SBT211     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3038384..3049043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD98_RS13640 (GJD98_13640) - 3039184..3039843 (+) 660 WP_010948343.1 hypothetical protein -
  GJD98_RS13645 (GJD98_13645) lcl 3040011..3041492 (+) 1482 WP_010948344.1 collagen-like adhesin Lcl -
  GJD98_RS13650 (GJD98_13650) uvrC 3041516..3043372 (-) 1857 WP_010948345.1 excinuclease ABC subunit UvrC -
  GJD98_RS13655 (GJD98_13655) letA 3043384..3044043 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  GJD98_RS13660 (GJD98_13660) phhA 3044168..3044986 (-) 819 WP_010948347.1 phenylalanine 4-monooxygenase -
  GJD98_RS13665 (GJD98_13665) - 3045425..3046522 (+) 1098 WP_010948348.1 competence/damage-inducible protein A -
  GJD98_RS13670 (GJD98_13670) cgtA 3046481..3047506 (-) 1026 WP_010948349.1 Obg family GTPase CgtA -
  GJD98_RS13675 (GJD98_13675) rpmA 3047721..3047999 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  GJD98_RS13680 (GJD98_13680) rplU 3048012..3048323 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=399944 GJD98_RS13655 WP_011216518.1 3043384..3044043(-) (letA) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=399944 GJD98_RS13655 WP_011216518.1 3043384..3044043(-) (letA) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTAGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTAAAAACCCACTCCCCTGATGTCGTATTATTAG
ATATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACGCGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCT
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAGTCAGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGTCTCAGGATTCCCCTTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995
  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995

Multiple sequence alignment