Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GJD98_RS12015 Genome accession   NZ_CP045974
Coordinates   2686380..2687084 (+) Length   234 a.a.
NCBI ID   WP_349254537.1    Uniprot ID   -
Organism   Legionella pneumophila strain AUSMDU00010536 isolate SBT211     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2681380..2692084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD98_RS11990 (GJD98_11990) - 2682597..2683490 (+) 894 WP_010948033.1 lpg2327 family Dot/Icm T4SS effector -
  GJD98_RS11995 (GJD98_11995) lem22 2683754..2684137 (+) 384 WP_010948034.1 Dot/Icm T4SS effector Lem22 -
  GJD98_RS12000 (GJD98_12000) - 2684331..2684561 (+) 231 WP_010948035.1 exodeoxyribonuclease VII small subunit -
  GJD98_RS12005 (GJD98_12005) - 2684542..2685438 (+) 897 WP_015444138.1 polyprenyl synthetase family protein -
  GJD98_RS12010 (GJD98_12010) bioC 2685482..2686336 (-) 855 WP_015444137.1 malonyl-ACP O-methyltransferase BioC -
  GJD98_RS12015 (GJD98_12015) comFC 2686380..2687084 (+) 705 WP_349254537.1 ComF family protein Machinery gene
  GJD98_RS12020 (GJD98_12020) - 2687113..2688186 (-) 1074 WP_015444135.1 M50 family metallopeptidase -
  GJD98_RS12025 (GJD98_12025) - 2688243..2688521 (-) 279 WP_010948040.1 hypothetical protein -
  GJD98_RS15605 - 2688539..2688715 (+) 177 WP_014844483.1 hypothetical protein -
  GJD98_RS12030 (GJD98_12030) hemA 2688839..2690113 (+) 1275 WP_015444133.1 glutamyl-tRNA reductase -
  GJD98_RS12035 (GJD98_12035) prfA 2690097..2691185 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  GJD98_RS12040 (GJD98_12040) prmC 2691178..2692041 (+) 864 WP_010948043.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26705.28 Da        Isoelectric Point: 9.2792

>NTDB_id=399940 GJD98_RS12015 WP_349254537.1 2686380..2687084(+) (comFC) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
MLQKLLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKNALKPDCLIPVPMHPKRLKRRGFNQAGVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSAVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=399940 GJD98_RS12015 WP_349254537.1 2686380..2687084(+) (comFC) [Legionella pneumophila strain AUSMDU00010536 isolate SBT211]
GTGCTCCAAAAATTATTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGTCAATACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAACGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGGTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATC
AGCTGTAACTTATGAACACGTTATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCTGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

97.436

100

0.974
  comFC Legionella pneumophila strain ERS1305867

97.449

83.761

0.816

Multiple sequence alignment