Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HTZ88_RS01340 Genome accession   NZ_CP054418
Coordinates   238927..239532 (+) Length   201 a.a.
NCBI ID   WP_305068203.1    Uniprot ID   -
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233927..244532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS01305 (HTZ88_01305) rplJ 234183..234716 (+) 534 WP_014973757.1 50S ribosomal protein L10 -
  HTZ88_RS01310 (HTZ88_01310) rplL 234763..235128 (+) 366 WP_014973758.1 50S ribosomal protein L7/L12 -
  HTZ88_RS01315 (HTZ88_01315) - 235192..235821 (+) 630 WP_014973759.1 class I SAM-dependent methyltransferase -
  HTZ88_RS01320 (HTZ88_01320) tadA 235811..236335 (+) 525 WP_014973760.1 tRNA adenosine(34) deaminase TadA -
  HTZ88_RS01325 (HTZ88_01325) - 236381..236899 (+) 519 WP_014973761.1 HD domain-containing protein -
  HTZ88_RS01335 (HTZ88_01335) dnaX 237125..238891 (+) 1767 WP_305068202.1 DNA polymerase III subunit gamma/tau -
  HTZ88_RS01340 (HTZ88_01340) recR 238927..239532 (+) 606 WP_305068203.1 recombination mediator RecR Machinery gene
  HTZ88_RS01345 (HTZ88_01345) - 239529..239789 (+) 261 WP_014973764.1 YaaL family protein -
  HTZ88_RS01350 (HTZ88_01350) tmk 239819..240463 (+) 645 WP_305068204.1 dTMP kinase -
  HTZ88_RS01355 (HTZ88_01355) - 240467..240796 (+) 330 WP_014973766.1 cyclic-di-AMP receptor -
  HTZ88_RS01360 (HTZ88_01360) - 240796..241719 (+) 924 WP_305068205.1 DNA polymerase III subunit delta -
  HTZ88_RS01365 (HTZ88_01365) rsmI 241721..242596 (+) 876 WP_014973768.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  HTZ88_RS01370 (HTZ88_01370) - 242639..243379 (+) 741 WP_014973769.1 acyl-[acyl-carrier-protein] thioesterase -
  HTZ88_RS01375 (HTZ88_01375) galE 243437..244432 (+) 996 WP_014973770.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22083.10 Da        Isoelectric Point: 4.5682

>NTDB_id=399652 HTZ88_RS01340 WP_305068203.1 238927..239532(+) (recR) [Leuconostoc carnosum strain 4010]
MDYPEPIAKLIDNYTKLPGIGVKTATRLAFYTLGMDETDVFDFSKALTSAKQDLTFCEICGNITEKNVNPCMICQDDSRD
QSTIFVVENSRDVMAMENTRDYHGLYHVLNGIISPSAGTGPEDINLPSLIRRLSEHQEINEVIVGTNVNAEGEATAMYLA
RLLKPAGLKVTRLAHGLAVGSDIDYADQLTLIKAVQGRTEL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=399652 HTZ88_RS01340 WP_305068203.1 238927..239532(+) (recR) [Leuconostoc carnosum strain 4010]
ATGGATTATCCAGAACCTATTGCAAAATTAATCGATAATTATACCAAATTACCAGGCATTGGTGTGAAAACAGCTACACG
CTTAGCCTTTTATACTTTAGGTATGGATGAAACCGATGTTTTTGATTTTTCAAAGGCCCTCACGAGTGCTAAACAAGATC
TGACATTTTGTGAAATCTGTGGCAATATTACAGAAAAAAATGTTAACCCATGTATGATTTGCCAGGATGATTCGCGTGAC
CAATCCACGATTTTTGTGGTTGAAAACTCACGCGATGTCATGGCCATGGAAAATACTCGTGACTATCATGGTTTGTACCA
TGTCTTGAATGGTATTATTTCACCAAGTGCAGGAACAGGCCCAGAAGACATTAATTTGCCTAGTCTTATCCGCCGTTTAT
CAGAGCATCAAGAAATTAATGAAGTGATTGTTGGGACCAATGTCAATGCTGAAGGTGAGGCGACTGCCATGTATTTAGCA
CGCCTGCTGAAGCCTGCTGGGTTAAAAGTGACAAGGTTAGCACATGGATTAGCTGTTGGCTCTGATATTGACTATGCTGA
TCAATTAACGTTAATTAAGGCTGTGCAAGGACGAACAGAATTATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-80)

Toprim domain (Toprim_4)

(82-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

65.174

100

0.652
  recR Bacillus subtilis subsp. subtilis str. 168

59.204

100

0.592
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.444

98.507

0.438